cluster # 2339

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Anopheles gambiae
cluster # 2339 cluster # 2339 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2339#0 length = 778 sequences # 1

consensus_2339#1 length = 676 sequences # 1

consensusID : consensus_2339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 778
fasta sequence

                              [TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTACAGATCCACGACCACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAGAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACACAGCGACGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGCGAAGGAAAAAATCACTGCAACGATGGACGAAACATATCTGAAGAATCTCGAAACGGCGGCCCACATCATCATGGCACCGCCGAATTCCATCACCAACCAGCAGCGGCAGGAGTTGGAGCACATTTTCACCACCTTCCGGAGGACGAAAACGCCGTACGCCCTCTGCCAGGCGATACTGGAAAAATCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGACGTTCTGAAGAAGGCGGTCGTCG]

[+] EMBL CNS092MT             [TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTACAGATCCACGACCACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAGAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACACAGCGACGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGCGAAGGAAAAAATCACTGCAACGATGGACGAAACATATCTGAAGAATCTCGAAACGGCGGCCCACATCATCATGGCACCGCCGAATTCCATCACCAACCAGCAGCGGCAGGAGTTGGAGCACATTTTCACCACCTTCCGGAGGACGAAAACGCCGTACGCCCTCTGCCAGGCGATACTGGAAAAATCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGACGTTCTGAAGAAGGCGGTCGTCG]




>consensus_2339#0
TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACCGTCCCG
CGGACAGTTGTGAGAGAAGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTAC
AGATCCACGACCACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGC
AGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCG
GTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAGAGGTC
ACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACA
GGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCA
AACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACACAGCGACGCATAGACAGA
GCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGCGAAG
GAAAAAATCACTGCAACGATGGACGAAACATATCTGAAGAATCTCGAAACGGCGGCCCAC
ATCATCATGGCACCGCCGAATTCCATCACCAACCAGCAGCGGCAGGAGTTGGAGCACATT
TTCACCACCTTCCGGAGGACGAAAACGCCGTACGCCCTCTGCCAGGCGATACTGGAAAAA
TCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGACGTTCTGAAGAAGGCGGTCGTCG

consensusID : consensus_2339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTACCGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCACCCCGGTGGCTGGTGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACAGTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGC]

[+] EMBL BM597691             [CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTACCGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCACCCCGGTGGCTGGTGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACAGTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGC]




>consensus_2339#1
CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTAC
CGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCA
CCCCGGTGGCTGGTGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACGGCGCACCGT
CCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGTCG
CGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACGGA
GCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCCGA
GGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGT
TGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTT
GCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGC
AACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACA
CACAGTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTC
GCCCATATCTTGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2339#0      ------------------------------------------------------------
consensus_2339#1      CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTAC 60
                                                                                  

consensus_2339#0      ------------------------------------------------------------
consensus_2339#1      CGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCA 120
                                                                                  

consensus_2339#0      ------TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACC 54
consensus_2339#1      CCCCGGTGGCTGG-TGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCAC-GGCGCACC 178
                            ******* ************************************* ********

consensus_2339#0      GTCCCGCGGACAGTTGTGAGAGAAGGCG-----------------GGCAGAAGCAACAGT 97
consensus_2339#1      GTCCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGT 238
                      ****************************                 ***************

consensus_2339#0      CGCGCATTTTCGGGTGTGCGTA-CAGATCCACGACCACGACGACGAAGGCGCACCGTACG 156
consensus_2339#1      CGCGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACG 298
                      ********************** **   ******* ************************

consensus_2339#0      GAGCAGCCAGACAGGCAGGCAGGCAGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCC 216
consensus_2339#1      GAGCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCC 358
                      ******************************* ****************************

consensus_2339#0      GAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTG 276
consensus_2339#1      GAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTG 418
                      ************************************************************

consensus_2339#0      GTTGTTTATGTCGCGAGAGAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTG 336
consensus_2339#1      GTTGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTG 478
                      ****************** *****************************************

consensus_2339#0      TTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAA 396
consensus_2339#1      TTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAA 538
                      ************************************************************

consensus_2339#0      GCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACA 456
consensus_2339#1      GCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACA 598
                      ************************************************************

consensus_2339#0      CACACACAGCGACGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGT 516
consensus_2339#1      CACACA--GTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGT 656
                      ******  * ** ***********************************************

consensus_2339#0      CCTCGCCCATATCTTGATGCGAAGGAAAAAATCACTGCAACGATGGACGAAACATATCTG 576
consensus_2339#1      CCTCGCCCATATCTTGATGC---------------------------------------- 676
                      ********************                                        

consensus_2339#0      AAGAATCTCGAAACGGCGGCCCACATCATCATGGCACCGCCGAATTCCATCACCAACCAG 636
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CAGCGGCAGGAGTTGGAGCACATTTTCACCACCTTCCGGAGGACGAAAACGCCGTACGCC 696
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CTCTGCCAGGCGATACTGGAAAAATCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGAC 756
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      GTTCTGAAGAAGGCGGTCGTCG 778
consensus_2339#1      ----------------------