cluster # 2342

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Anopheles gambiae
cluster # 2342 cluster # 2342 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2342#0 length = 709 sequences # 1

consensus_2342#1 length = 355 sequences # 1

consensusID : consensus_2342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence

                              [AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATAGGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAACAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACACACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCTCCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACTGGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATAACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTATTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC]

[+] EMBL BX621318             [AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATAGGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAACAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACACACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCTCCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACTGGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATAACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTATTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC]




>consensus_2342#0
AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATA
GGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAA
CAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACAC
ACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCT
CCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACT
GGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCT
TCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGT
GCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGG
AAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTG
CAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATA
ACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTA
TTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC

consensusID : consensus_2342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [TGCCCCCAGGCGNTATAAGTGGAACTGGTCGGAACTGGTATACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGCCTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTGTTTTGTATACAAATAAAGGATGCACATAAGTCCTGTTTTTTTCTTAAAAAAAA]

[+] EMBL AL697481             [TGCCCCCAGGCGNTATAAGTGGAACTGGTCGGAACTGGTATACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGCCTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTGTTTTGTATACAAATAAAGGATGCACATAAGTCCTGTTTTTTTCTTAAAAAAAA]




>consensus_2342#1
TGCCCCCAGGCGNTATAAGTGGAACTGGTCGGAACTGGTATACTGTATAGGGAAATATCT
CCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTGTATTCTCGGTCTCATCG
TGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGCCTGAAATAGG
CGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAAT
CGTTTGTTTTACGTGTGTGTCTGTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTT
TGTTTTGTATACAAATAAAGGATGCACATAAGTCCTGTTTTTTTCTTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2342#0      AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATA 60
consensus_2342#1      ------------------------------------------------------------
                                                                                  

consensus_2342#0      GGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAA 120
consensus_2342#1      ------------------------------------------------------------
                                                                                  

consensus_2342#0      CAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACAC 180
consensus_2342#1      ------------------------------------------------------------
                                                                                  

consensus_2342#0      ACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCT 240
consensus_2342#1      ------------------------------------------------------------
                                                                                  

consensus_2342#0      CCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACT 300
consensus_2342#1      --------------------TGCCCCCAGGCGNT----ATAAGTGGAACTGGTCGGAACT 36
                                          *  * *  ***  *     *********************

consensus_2342#0      GGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCT 360
consensus_2342#1      GGTAT-ACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCT 95
                      ***** ******************************************************

consensus_2342#0      TCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGT 420
consensus_2342#1      TCCCTGT-GTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGT 154
                      ******* ****************************************************

consensus_2342#0      GCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGG 480
consensus_2342#1      GCGCTAACGCAGACGCCTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGG 214
                      *************** ********************************************

consensus_2342#0      AAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTG 540
consensus_2342#1      AAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTT-GGTGTG 273
                      ***************************************************** ******

consensus_2342#0      CAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATA 600
consensus_2342#1      CAAAAGGATGGAATGCACAATTCATTTTG---TTTTGTATACAAATAAAGGATGCACATA 330
                      ****************************    ****************************

consensus_2342#0      ACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTA 660
consensus_2342#1      A-GTCCTGTTTTTTTCTTAAAAAAAA---------------------------------- 355
                      * ************************                                  

consensus_2342#0      TTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC 709
consensus_2342#1      -------------------------------------------------