cluster # 2352

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2352 cluster # 2352 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2352#0 length = 463 sequences # 1

consensus_2352#1 length = 211 sequences # 1

consensusID : consensus_2352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CAAGAATCGCCCCCGAGGAGGACTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGGTTGGGGAAGGAGAGTTGCAGTGCTACAGGACACACCACTTTAATTCGTTTTGTCCCACCTTTCCCGCCGCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTGGAAGGGTTCGATCGTGGCGATTGTCAACTGCTCAACACGGACTCAAACTCCTCCCAGCGGGCGATGATCGAAACGCAGGTCCAACCGCTGGCGGCCAATGTGACGATGGTGATAGTGATTATAAAGTCGGTGGTTCCGGTCCTGAGTGCCCTGCTGCTCGGTGCGTGGTCTGATCGTTACGGTCGAAAGCCTGCCATGCTGATCGCG]

[+] EMBL AL933745             [CAAGAATCGCCCCCGAGGAGGACTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGGTTGGGGAAGGAGAGTTGCAGTGCTACAGGACACACCACTTTAATTCGTTTTGTCCCACCTTTCCCGCCGCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTGGAAGGGTTCGATCGTGGCGATTGTCAACTGCTCAACACGGACTCAAACTCCTCCCAGCGGGCGATGATCGAAACGCAGGTCCAACCGCTGGCGGCCAATGTGACGATGGTGATAGTGATTATAAAGTCGGTGGTTCCGGTCCTGAGTGCCCTGCTGCTCGGTGCGTGGTCTGATCGTTACGGTCGAAAGCCTGCCATGCTGATCGCG]




>consensus_2352#0
CAAGAATCGCCCCCGAGGAGGACTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCATGCG
GCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGC
TTTGCCATGAGCATCTCAGGTTGGGGAAGGAGAGTTGCAGTGCTACAGGACACACCACTT
TAATTCGTTTTGTCCCACCTTTCCCGCCGCAGAGGTCGTCCTGGCGAATCATATCATCCT
GCAGACGTGCCTCGTGGAAGGGTTCGATCGTGGCGATTGTCAACTGCTCAACACGGACTC
AAACTCCTCCCAGCGGGCGATGATCGAAACGCAGGTCCAACCGCTGGCGGCCAATGTGAC
GATGGTGATAGTGATTATAAAGTCGGTGGTTCCGGTCCTGAGTGCCCTGCTGCTCGGTGC
GTGGTCTGATCGTTACGGTCGAAAGCCTGCCATGCTGATCGCG

consensusID : consensus_2352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTG]

[+] EMBL AL697534             [CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTG]




>consensus_2352#1
CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAA
GCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAG
CTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGC
GAATCATATCATCCTGCAGACGTGCCTCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2352#0      ---------------------CAAGAATCGCCCC-----CGAGGAGGAC-TGTTCGCCAA 33
consensus_2352#1      CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAA 60
                                           **       * **     *** ****** **********

consensus_2352#0      GCAGAGCCTGATGAGGTTGCGCA-TGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAG 92
consensus_2352#1      GCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAG 120
                      *********************** ************************************

consensus_2352#0      CTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAG-GTTGGGGAAGGA 151
consensus_2352#1      CTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGC 180
                      *********************************************** * * *    ** 

consensus_2352#0      GAGTTGCA--GTGCTACAGGACACACCACTTTAATTCGTTTTGTCCCACCTTTCCCGCCG 209
consensus_2352#1      GAATCATATCATCCTGCAG-ACGTGCCTCGTG---------------------------- 211
                      ** *   *   * ** *** **   ** * *                             

consensus_2352#0      CAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTGGAAGGGTTCGATC 269
consensus_2352#1      ------------------------------------------------------------
                                                                                  

consensus_2352#0      GTGGCGATTGTCAACTGCTCAACACGGACTCAAACTCCTCCCAGCGGGCGATGATCGAAA 329
consensus_2352#1      ------------------------------------------------------------
                                                                                  

consensus_2352#0      CGCAGGTCCAACCGCTGGCGGCCAATGTGACGATGGTGATAGTGATTATAAAGTCGGTGG 389
consensus_2352#1      ------------------------------------------------------------
                                                                                  

consensus_2352#0      TTCCGGTCCTGAGTGCCCTGCTGCTCGGTGCGTGGTCTGATCGTTACGGTCGAAAGCCTG 449
consensus_2352#1      ------------------------------------------------------------
                                                                                  

consensus_2352#0      CCATGCTGATCGCG 463
consensus_2352#1      --------------