cluster # 2368

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Anopheles gambiae
cluster # 2368 cluster # 2368 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2368#0 length = 814 sequences # 1

consensus_2368#1 length = 644 sequences # 1

consensusID : consensus_2368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 814
fasta sequence

                              [GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACAGCGTGAGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGGAGGGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAGCGAGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACCGGATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAGACTGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTTCACAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGGACGGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGGNTGAGGAATCCATGCGGGTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCAAAGATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGGAAACAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG]

[+] EMBL BX468672             [GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACAGCGTGAGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGGAGGGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAGCGAGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACCGGATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAGACTGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTTCACAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGGACGGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGGNTGAGGAATCCATGCGGGTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCAAAGATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGGAAACAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG]




>consensus_2368#0
GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACAGCGTGA
GACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGA
CTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGGC
GGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATAC
TGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGGAG
GGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAGCG
AGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACCGG
ATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAGAC
TGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTTCA
CAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGGAC
GGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGGNT
GAGGAATCCATGCGGGTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCAAAG
ATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGGAAA
CAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG

consensusID : consensus_2368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCCCGCAGGTTATGTACGTTGAAACGAGTGACGTGCTACATGCGTGATGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCTACCCAGGATTTGGTAAACTTTCACTATGACGTTATGACGGAGGTGCTCACGCTGCAAAAGTTCGGACCACGGTCGACAATGAAGCGAGCGAAAGTGAACGAAGATATCAACGGCGATAATAACGGCCCCACGGATAGCAGCAACGTTTTACTGCCTGGGTTGAAATTTTACAAACTGCACGGACACATGACGCAGCTGGAGCGTATCTCGGTGTTTAACGAGTTCCGCAAAGCCACGGCAGCGGTGCTAATTTGCACGGACGTTGCGGCCCGTGGTATTGACATCCCGCTGGTGGATCTGGTGGTGCAGTACCATGCGCCGCAAATACTGGCCGACTATGTTGCACCAGTGATGGGTCGNACAGAGCGTGCAGGGGCACTACGGGCAAGGCCAAGCTGATTCT]

[+] EMBL AL713826             [CCCCGCAGGTTATGTACGTTGAAACGAGTGACGTGCTACATGCGTGATGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCTACCCAGGATTTGGTAAACTTTCACTATGACGTTATGACGGAGGTGCTCACGCTGCAAAAGTTCGGACCACGGTCGACAATGAAGCGAGCGAAAGTGAACGAAGATATCAACGGCGATAATAACGGCCCCACGGATAGCAGCAACGTTTTACTGCCTGGGTTGAAATTTTACAAACTGCACGGACACATGACGCAGCTGGAGCGTATCTCGGTGTTTAACGAGTTCCGCAAAGCCACGGCAGCGGTGCTAATTTGCACGGACGTTGCGGCCCGTGGTATTGACATCCCGCTGGTGGATCTGGTGGTGCAGTACCATGCGCCGCAAATACTGGCCGACTATGTTGCACCAGTGATGGGTCGNACAGAGCGTGCAGGGGCACTACGGGCAAGGCCAAGCTGATTCT]




>consensus_2368#1
CCCCGCAGGTTATGTACGTTGAAACGAGTGACGTGCTACATGCGTGATGACGCCAACGGT
CGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCAT
ACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGCGGCTCGTTGCACT
GAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGC
TACCCAGGATTTGGTAAACTTTCACTATGACGTTATGACGGAGGTGCTCACGCTGCAAAA
GTTCGGACCACGGTCGACAATGAAGCGAGCGAAAGTGAACGAAGATATCAACGGCGATAA
TAACGGCCCCACGGATAGCAGCAACGTTTTACTGCCTGGGTTGAAATTTTACAAACTGCA
CGGACACATGACGCAGCTGGAGCGTATCTCGGTGTTTAACGAGTTCCGCAAAGCCACGGC
AGCGGTGCTAATTTGCACGGACGTTGCGGCCCGTGGTATTGACATCCCGCTGGTGGATCT
GGTGGTGCAGTACCATGCGCCGCAAATACTGGCCGACTATGTTGCACCAGTGATGGGTCG
NACAGAGCGTGCAGGGGCACTACGGGCAAGGCCAAGCTGATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2368#0      GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACA-GCGTG 59
consensus_2368#1      ------------CCCCGCAGGTTA-TGTACGTTGAAACGAGTGA-CGTGCTACATGCGTG 46
                                   * **  *     ******************* ********* *****

consensus_2368#0      A-GACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGC 118
consensus_2368#1      ATGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGC 106
                      * **********************************************************

consensus_2368#0      GACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAG 178
consensus_2368#1      GACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAG 166
                      ************************************************************

consensus_2368#0      GCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAAT 238
consensus_2368#1      -CGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAAT 225
                       ***********************************************************

consensus_2368#0      ACTGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGG 298
consensus_2368#1      ACTGGTTTTCATGGC-TACCCAGGATTTGGTAAACTTTCAC-TATGA-CGTTATGAC-GG 281
                      *************** ************************* ***** **** **** **

consensus_2368#0      AGGGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAG 358
consensus_2368#1      AGG--TGCTCA-CGCTG-CAAAAG--TTCGG-------ACCACGGTCG-ACAA--TGAAG 325
                      ***  ****** ***** *****   *****       * *  ***** ****  *****

consensus_2368#0      CGAGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACC 418
consensus_2368#1      CGAGC-GAAAGTGAAC---GAAGATAT-CAACGGCGATAATAA------CGGCCCCA--C 372
                      ***** **********    * ***** **** * *   ** *      *** ****  *

consensus_2368#0      GGATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAG 478
consensus_2368#1      GGATA--GCAG---CAACGTTTTA---CTG--CCTGGGTTGAAA------TTTTACAA-- 414
                      *****  ****     *******    ***  * ******** *      ***  * *  

consensus_2368#0      ACTGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTT 538
consensus_2368#1      ACTGCAC----GGAC--ACATGACGCAGCTGG--------AGCGTATCTC----GGTGTT 456
                      ****  *    ****  ****    * **  *        ********      ******

consensus_2368#0      CACAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGG 598
consensus_2368#1      TA--AC--GAGTTCCGCAAAG--CCACGGCAGCGGTGCTAATTTGCACGGACGTTGCGGC 510
                       *  **  ************   * ****    *  * *    *    *   *   *** 

consensus_2368#0      ACGGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGG 658
consensus_2368#1      CCG---TGGTATTGACATCCCGCTGGTGGATCTGGTGGTGCAGTACCATGCGCCGCAAAT 567
                       **   **  *  *    ** * *** * *  * *     ** * **    * *  *   

consensus_2368#0      NTGAGGAATCCATGCGG-GTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCA 717
consensus_2368#1      ACTGGCCGACTATGTTGCACCAGTGATGGGTCGNACAGAGCGTGCAGGGGCACTACGGGC 627
                          *    * ***  *       *  *    *   * * *     **  *    ***  

consensus_2368#0      AAGATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGG 777
consensus_2368#1      AAGGCCAAGCTGATTCT------------------------------------------- 644
                      ***   ** ***   *                                            

consensus_2368#0      AAACAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG 814
consensus_2368#1      -------------------------------------