cluster # 2369

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Anopheles gambiae
cluster # 2369 cluster # 2369 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2369#0 length = 611 sequences # 1

consensus_2369#1 length = 610 sequences # 1

consensusID : consensus_2369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAACAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTTG]

[+] EMBL BM597361             [CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAACAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTTG]




>consensus_2369#0
CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAA
CAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGA
GGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGA
ATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGG
CAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGC
AGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGA
GTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTG
CAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCAT
GAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGA
CATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCAC
CATCCCGCTTG

consensusID : consensus_2369#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CCGCCCACGCGTCCGGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTGGCAGGAGGACGTCGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGGAGGGTCTGCAGTGGGAGACACCGTACCGGCTG]

[+] EMBL BM636492             [CCGCCCACGCGTCCGGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTGGCAGGAGGACGTCGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGGAGGGTCTGCAGTGGGAGACACCGTACCGGCTG]




>consensus_2369#1
CCGCCCACGCGTCCGGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGAT
GATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGAC
GATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGAT
GGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAG
AAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACG
ATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAAC
TGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAAT
CTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTG
CGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTGGCAGGAGGACGT
CGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGGAGGGTCTGCAGTGGGAGACACC
GTACCGGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2369#0      CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAA 60
consensus_2369#1      ------------------------------------------------------------
                                                                                  

consensus_2369#0      CAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGA 120
consensus_2369#1      --------------------CCGCCCACGCGTCCG--GAAGAGCAGGAAGAGGAGGAGGA 38
                                          **  * **     **  ***********************

consensus_2369#0      GGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGA 180
consensus_2369#1      GGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGA 98
                      ************************************************************

consensus_2369#0      ATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGG 240
consensus_2369#1      ATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGG 158
                      ************************************************************

consensus_2369#0      CAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGC 300
consensus_2369#1      CAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGC 218
                      ************************************************************

consensus_2369#0      AGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGA 360
consensus_2369#1      AGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGA 278
                      ************************************************************

consensus_2369#0      GTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTG 420
consensus_2369#1      GTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTG 338
                      ************************************************************

consensus_2369#0      CAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCAT 480
consensus_2369#1      CAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCAT 398
                      ************************************************************

consensus_2369#0      GAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGA 540
consensus_2369#1      GAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGA 458
                      ************************************************************

consensus_2369#0      CATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCAC 600
consensus_2369#1      CATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCAC 518
                      ************************************************************

consensus_2369#0      CATCCCGCTTG------------------------------------------------- 611
consensus_2369#1      CATCCCGCTGGCAGGAGGACGTCGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGG 578
                      ********* *                                                 

consensus_2369#0      --------------------------------
consensus_2369#1      AGGGTCTGCAGTGGGAGACACCGTACCGGCTG 610