cluster # 2374

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Anopheles gambiae
cluster # 2374 cluster # 2374 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2374#0 length = 612 sequences # 1

consensus_2374#1 length = 440 sequences # 1

consensusID : consensus_2374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [AATCCCCGAGGTTTAGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGTTCGCCGGCCGGCTTCAATGGGCCCGGGAACGGTAGCAATGGGCAGCAGCAGCGGATGCAGCCGCCGCTGCACGACTTTGAAGCGGACGACGATGGGCTGATACGGCCACTGCGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCCTTGCNACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACACACAAGCACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGGCCGCGAATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTATGCGAGCAATGC]

[+] EMBL AL929655             [AATCCCCGAGGTTTAGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGTTCGCCGGCCGGCTTCAATGGGCCCGGGAACGGTAGCAATGGGCAGCAGCAGCGGATGCAGCCGCCGCTGCACGACTTTGAAGCGGACGACGATGGGCTGATACGGCCACTGCGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCCTTGCNACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACACACAAGCACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGGCCGCGAATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTATGCGAGCAATGC]




>consensus_2374#0
AATCCCCGAGGTTTAGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGC
TGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCA
TCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGTTCGACATGGCGC
CGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCTACCCGCTGATGGATTGCGAAA
TGACGCAGCTTCGTTCGCCGGCCGGCTTCAATGGGCCCGGGAACGGTAGCAATGGGCAGC
AGCAGCGGATGCAGCCGCCGCTGCACGACTTTGAAGCGGACGACGATGGGCTGATACGGC
CACTGCGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCC
TTGCNACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACAC
ACAAGCACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGG
CCGCGAATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTA
TGCGAGCAATGC

consensusID : consensus_2374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGTTCGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGCAGCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTGCGGTACGCATTTTCCCATCGC]

[+] EMBL BX469114             [GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGTTCGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGCAGCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTGCGGTACGCATTTTCCCATCGC]




>consensus_2374#1
GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGG
ACGAAGCGCAAGCCATACAGGCACTGCAAATAGCGGTCAAGCTGGACGGTGACATCATCA
CCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGC
TCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTGC
TACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGTT
CGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGCA
GCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTGC
GGTACGCATTTTCCCATCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2374#0      -------------------------------------------AATCCCCGAGGTTTAGG 17
consensus_2374#1      GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGG 60
                                                                       ****     **

consensus_2374#0      ACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGCTGGACGGTGACATCATC 77
consensus_2374#1      ACGAAGCGCAAGCCATACAGGCACTGCAAATAGC-GGTCAAGCTGGACGGTGACATCATC 119
                      ********************************** *************************

consensus_2374#0      ACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCG 137
consensus_2374#1      ACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCG 179
                      ************************************************************

consensus_2374#0      CTCACCGTGTGCCACAACTGTCCGACCAAG-TTCGACATGGCGCCGGAGCCGAACGGCTG 196
consensus_2374#1      CTCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTG 239
                      ****************************** *****************************

consensus_2374#0      CTACATCGAGACGAACTATCGC-TACCCGCTGATGGATTGCGAAATGACGCAGCTTCG-T 254
consensus_2374#1      CTACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGT 299
                      ********************** *********************************** *

consensus_2374#0      TCGCCGGCCGGCTTCAATGGGCCCGGGAA-CGGTAGCAATGGGCAGCAG-CAGCGGATGC 312
consensus_2374#1      TCGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGC 359
                      ***************************** ******************* **********

consensus_2374#0      AGCCGCCG-CTGCACGACTTT---GAAGCGGACGAC-GATGGGCTGATAC--GGCCACTG 365
consensus_2374#1      AGCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTG 419
                      ******** ************    * ********* *** *********  *** ****

consensus_2374#0      CGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCCTTGCN 425
consensus_2374#1      CGGTACGCATTTTCCCATCGC--------------------------------------- 440
                      *******  **    *    *                                       

consensus_2374#0      ACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACACACAAG 485
consensus_2374#1      ------------------------------------------------------------
                                                                                  

consensus_2374#0      CACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGGCCGCG 545
consensus_2374#1      ------------------------------------------------------------
                                                                                  

consensus_2374#0      AATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTATGCGA 605
consensus_2374#1      ------------------------------------------------------------
                                                                                  

consensus_2374#0      GCAATGC 612
consensus_2374#1      -------