cluster # 2375

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Anopheles gambiae
cluster # 2375 cluster # 2375 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2375#0 length = 607 sequences # 1

consensus_2375#1 length = 377 sequences # 1

consensusID : consensus_2375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGCCACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGAGCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACACAAAAGTTATTAACAAAAAAAACAAAACGTTGATGAAATGACCCACCTATCTCTACATGAATAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGATGACAGAGGAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGTTTGTGTTGTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCACATATGAAAATTTTT]

[+] EMBL BM635754             [CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGCCACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGAGCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACACAAAAGTTATTAACAAAAAAAACAAAACGTTGATGAAATGACCCACCTATCTCTACATGAATAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGATGACAGAGGAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGTTTGTGTTGTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCACATATGAAAATTTTT]




>consensus_2375#0
CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGC
CACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAG
CAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCT
GCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCT
GGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGA
GCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACAC
AAAAGTTATTAACAAAAAAAACAAAACGTTGATGAAATGACCCACCTATCTCTACATGAA
TAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGATGACAGAG
GAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGTTTGTGTT
GTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCACATATGAA
AATTTTT

consensusID : consensus_2375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [CCGAGGTTACGCACGACGAGCTCGTCGTAGTTAGCTCAATTGAAAGCACTACAACGATATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAGCAGGAGGAGCAGGAGGAGAAACAGGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCAAAGGTGAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCACACGACGACGCCAGCGGTGGC]

[+] EMBL AL929656             [CCGAGGTTACGCACGACGAGCTCGTCGTAGTTAGCTCAATTGAAAGCACTACAACGATATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAGCAGGAGGAGCAGGAGGAGAAACAGGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCAAAGGTGAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCACACGACGACGCCAGCGGTGGC]




>consensus_2375#1
CCGAGGTTACGCACGACGAGCTCGTCGTAGTTAGCTCAATTGAAAGCACTACAACGATAT
TACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACG
CAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCC
ACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAG
CAGGAGGAGCAGGAGGAGAAACAGGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCA
AAGGTGAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCACACG
ACGACGCCAGCGGTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2375#0      CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGC 60
consensus_2375#1      -------------------------------------------------CCGAGGTTACG 11
                                                                         ** *     

consensus_2375#0      CACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAG 120
consensus_2375#1      CACGACGAGCTCGTC-GTAGTTAGCTCAATTGAAAGCACTA-CAACGATA-TTACGAAAG 68
                      *************** ************************* ******** *********

consensus_2375#0      CAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCT 180
consensus_2375#1      CAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCT 128
                      ************************************************************

consensus_2375#0      GCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCT 240
consensus_2375#1      GCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCCACCCCGCT 188
                      *************************************** ********************

consensus_2375#0      GGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGA 300
consensus_2375#1      GGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAGCAGGAGGA 248
                      ************************************* * **      ****  *** **

consensus_2375#0      GCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACAC 360
consensus_2375#1      GCAGGAGGAGAAACA--GGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCAAAG-GT 305
                      **  *  * *** **  *  *** *** *  ** * **  * * * *** * ****    

consensus_2375#0      AAAAGTTATTAACAAAAAAAA------CAAAACGTTGATG-AAATGACCCACCTATCTCT 413
consensus_2375#1      GAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCAC--ACGACG 363
                       ** ** **  *      **       * **  ****  * ***** *****  *   * 

consensus_2375#0      ACATGAATAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGAT 473
consensus_2375#1      ACGCCAGCGGTGGC---------------------------------------------- 377
                      **   *    **                                                

consensus_2375#0      GACAGAGGAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGT 533
consensus_2375#1      ------------------------------------------------------------
                                                                                  

consensus_2375#0      TTGTGTTGTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCAC 593
consensus_2375#1      ------------------------------------------------------------
                                                                                  

consensus_2375#0      ATATGAAAATTTTT 607
consensus_2375#1      --------------