These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCATCCCATCCCGAACGGATCGTGCCCCCTCGCGTGTCCGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGCCGTACCATTAGCAGCGCCCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACAGCGTGCCTCGATCCGTCCTACCCGTGTTGTGCCGAGCCCTGTGCGCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTCCCGCGGCTGACTGCTGCCCGGCCGAGATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATGAA] [+] EMBL AL932856 [CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCATCCCATCCCGAACGGATCGTGCCCCCTCGCGTGTCCGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGCCGTACCATTAGCAGCGCCCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACAGCGTGCCTCGATCCGTCCTACCCGTGTTGTGCCGAGCCCTGTGCGCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTCCCGCGGCTGACTGCTGCCCGGCCGAGATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATGAA] consensusID : consensus_2415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CCGAGGTTTAGAGCGGCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCAACCATCCCATCCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTAACCCTGTGGTATGTTGCCAGGAGACCCCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGCACGGATTGGTTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG] [+] EMBL AL929989 [CCGAGGTTTAGAGCGGCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCAACCATCCCATCCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTAACCCTGTGGTATGTTGCCAGGAGACCCCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGCACGGATTGGTTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2415#0 CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCAT 60 consensus_2415#1 ---CCGAGGTTTAGAGCGGCGCAACATGCCTG--TTTTTTTTTTTTTTTTTTGCAACCAT 55 ****** ** ******************* *********** **** ********* consensus_2415#0 CCCATCCCGAACGGATC-GTGCCCCCTCGCGTGTCC-GTCCGAACGCCTGAAGCTGCCCA 118 consensus_2415#1 CCCATCCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCA 115 ***************** ****************** *********************** consensus_2415#0 AATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCC-GATGGCCGA 177 consensus_2415#1 AATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGA 175 ************************************************** ********* consensus_2415#0 AACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTA 237 consensus_2415#1 AACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTA 235 ************************************************************ consensus_2415#0 CTGCGATGAGGCTGCCGTACCATTAGCAGC-GC-CCCAAATTCCCTGCTGCGCCCCAACC 295 consensus_2415#1 CTGCGATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACC 295 ************** *************** ** ************************** consensus_2415#0 GGTGGAGAAATTCCCGACAC-AGCGT-GCCTCGATCCGTCCTACCCGTGTTGTGCCGAGC 353 consensus_2415#1 GGTGGAGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTA--ACCCTGTGG 353 ******************** ***** **** *** ** * * * * consensus_2415#0 CCTGTGCGCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTC-CCGCGGCTGACTGCTGC 412 consensus_2415#1 TATGTTGCCAGGAGACC--CCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGC 411 *** *** ** * * ** * * ** *** * *** * * * ** consensus_2415#0 CCGGCCGAGATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATG 472 consensus_2415#1 ACGGATTGGTTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG-------- 463 *** * * ** ** * ** * *** ** * consensus_2415#0 AA 474 consensus_2415#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||