cluster # 2415

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Anopheles gambiae
cluster # 2415 cluster # 2415 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2415#0 length = 474 sequences # 1

consensus_2415#1 length = 463 sequences # 1

consensusID : consensus_2415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCATCCCATCCCGAACGGATCGTGCCCCCTCGCGTGTCCGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGCCGTACCATTAGCAGCGCCCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACAGCGTGCCTCGATCCGTCCTACCCGTGTTGTGCCGAGCCCTGTGCGCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTCCCGCGGCTGACTGCTGCCCGGCCGAGATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATGAA]

[+] EMBL AL932856             [CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCATCCCATCCCGAACGGATCGTGCCCCCTCGCGTGTCCGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGCCGTACCATTAGCAGCGCCCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACAGCGTGCCTCGATCCGTCCTACCCGTGTTGTGCCGAGCCCTGTGCGCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTCCCGCGGCTGACTGCTGCCCGGCCGAGATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATGAA]




>consensus_2415#0
CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCAT
CCCATCCCGAACGGATCGTGCCCCCTCGCGTGTCCGTCCGAACGCCTGAAGCTGCCCAAA
TTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCGATGGCCGAAAC
GGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTG
CGATGAGGCTGCCGTACCATTAGCAGCGCCCCAAATTCCCTGCTGCGCCCCAACCGGTGG
AGAAATTCCCGACACAGCGTGCCTCGATCCGTCCTACCCGTGTTGTGCCGAGCCCTGTGC
GCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTCCCGCGGCTGACTGCTGCCCGGCCGA
GATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATGAA

consensusID : consensus_2415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CCGAGGTTTAGAGCGGCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCAACCATCCCATCCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTAACCCTGTGGTATGTTGCCAGGAGACCCCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGCACGGATTGGTTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG]

[+] EMBL AL929989             [CCGAGGTTTAGAGCGGCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCAACCATCCCATCCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCAAATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGAAACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCGATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACCGGTGGAGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTAACCCTGTGGTATGTTGCCAGGAGACCCCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGCACGGATTGGTTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG]




>consensus_2415#1
CCGAGGTTTAGAGCGGCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCAACCATCCCAT
CCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCAAATTT
AGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGAAACGG
AAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTACTGCG
ATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACCGGTGG
AGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTAACCCTGTGGTATGTTG
CCAGGAGACCCCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGCACGGATTGG
TTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2415#0      CGCCCGAGGGTTGGAGCGGCGCAACATGCCTGCTTTTTTTTTTTTNTTTTCTGCAACCAT 60
consensus_2415#1      ---CCGAGGTTTAGAGCGGCGCAACATGCCTG--TTTTTTTTTTTTTTTTTTGCAACCAT 55
                         ****** ** *******************  *********** **** *********

consensus_2415#0      CCCATCCCGAACGGATC-GTGCCCCCTCGCGTGTCC-GTCCGAACGCCTGAAGCTGCCCA 118
consensus_2415#1      CCCATCCCGAACGGATCTGTGCCCCCTCGCGTGTCCTGTCCGAACGCCTGAAGCTGCCCA 115
                      ***************** ****************** ***********************

consensus_2415#0      AATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCC-GATGGCCGA 177
consensus_2415#1      AATTTAGGTTCGAAATTTTCAAGCCATTCAAAACCGGAAGTTCAAGTCCCTGATGGCCGA 175
                      ************************************************** *********

consensus_2415#0      AACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTA 237
consensus_2415#1      AACGGAAGGGGTGTGCTTAGTCGCGGAGCAGGATCCATGTGCAGCGGGTTGCACTGTCTA 235
                      ************************************************************

consensus_2415#0      CTGCGATGAGGCTGCCGTACCATTAGCAGC-GC-CCCAAATTCCCTGCTGCGCCCCAACC 295
consensus_2415#1      CTGCGATGAGGCTGGCGTACCATTAGCAGCTGCACCCAAATTCCCTGCTGCGCCCCAACC 295
                      ************** *************** ** **************************

consensus_2415#0      GGTGGAGAAATTCCCGACAC-AGCGT-GCCTCGATCCGTCCTACCCGTGTTGTGCCGAGC 353
consensus_2415#1      GGTGGAGAAATTCCCGACACCAGCGTTGCCTTCCGGATTCCCGTCCTTA--ACCCTGTGG 353
                      ******************** ***** ****       ***   ** *      * * * 

consensus_2415#0      CCTGTGCGCAGTCCGCCATCGTCGTCGACGATTGTTCCGTTC-CCGCGGCTGACTGCTGC 412
consensus_2415#1      TATGTTGCCAGGAGACC--CCTTGTTGCTGCCAGTCCCGGCCATTCCGGTTCGTTCCGGC 411
                        ***   ***    **  * * ** *  *   ** ***  *    *** *   * * **

consensus_2415#0      CCGGCCGAGATGCCACAGTGCTGCAACTGTGCCTGCGGTAGGCCGGGATGTGTGCCCATG 472
consensus_2415#1      ACGGATTGGTTCCCGGTTCGCCCGGCGGGCCTTTGAACTTGGCTTGGCCCCG-------- 463
                       ***    * * **     **       *    **   * ***  **    *        

consensus_2415#0      AA 474
consensus_2415#1      --