cluster # 2421

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Anopheles gambiae
cluster # 2421 cluster # 2421 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2421#0 length = 638 sequences # 1

consensus_2421#1 length = 561 sequences # 1

consensusID : consensus_2421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCCCGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGAGCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCGCGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGTCGAGGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC]

[+] EMBL BM592301             [CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCCCGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGAGCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCGCGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGTCGAGGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC]




>consensus_2421#0
CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCC
CGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGA
GCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCG
CGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGC
AAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGA
GCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTG
CCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGT
CGAGGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAA
ATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACGAT
CGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAATT
CGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC

consensusID : consensus_2421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [GATCGCCCGAGGTTATCAGTGGCGCGCGGCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGTCGCACGGAGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACCGAACCTTGCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACCGGTGTTTAAGCTTGTTATTGTATAATTT]

[+] EMBL AL930047             [GATCGCCCGAGGTTATCAGTGGCGCGCGGCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGTCGCACGGAGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACCGAACCTTGCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACCGGTGTTTAAGCTTGTTATTGTATAATTT]




>consensus_2421#1
GATCGCCCGAGGTTATCAGTGGCGCGCGGCATGCAGCTTCCCCTGGCAAAGGCAAGCGTT
TACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTG
TGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGG
CTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGTCGCACGG
AGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCC
TCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACGATCGCTG
CTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAATTCGTGA
AGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACCGAACCTT
GCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACCGGTGTTT
AAGCTTGTTATTGTATAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2421#0      CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCC 60
consensus_2421#1      ------------------------------------------------------------
                                                                                  

consensus_2421#0      CGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGA 120
consensus_2421#1      ------------------------------------------------------------
                                                                                  

consensus_2421#0      GCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCG 180
consensus_2421#1      ------------------------------------------------------------
                                                                                  

consensus_2421#0      CGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGC 240
consensus_2421#1      ------GATCGCCCGAGGTTATCAGTGGCGCGCGGC-ATGCAGCTTCCCCTGGCAAAGGC 53
                            **      ** *  **************** ***********************

consensus_2421#0      AAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGA 300
consensus_2421#1      AAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGA 113
                      ************************************************************

consensus_2421#0      GCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTG 360
consensus_2421#1      GCGCGTGTGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTG 173
                      *************** ****** *************************************

consensus_2421#0      CCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGT 420
consensus_2421#1      CCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGT 233
                      ***************************************** ******************

consensus_2421#0      CGA--GGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCG 478
consensus_2421#1      CGCACGGAGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCG 293
                      **   ********** ********************************************

consensus_2421#0      AAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACG 538
consensus_2421#1      AAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACG 353
                      *********************************************** ************

consensus_2421#0      ATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAA 598
consensus_2421#1      ATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAA 413
                      ************************************** ******** ************

consensus_2421#0      TTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC-------------------- 638
consensus_2421#1      TTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACC 473
                      ****************************************                    

consensus_2421#0      ------------------------------------------------------------
consensus_2421#1      GAACCTTGCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACC 533
                                                                                  

consensus_2421#0      ----------------------------
consensus_2421#1      GGTGTTTAAGCTTGTTATTGTATAATTT 561