cluster # 2443

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Anopheles gambiae
cluster # 2443 cluster # 2443 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2443#0 length = 767 sequences # 1

consensus_2443#1 length = 548 sequences # 1

consensusID : consensus_2443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 767
fasta sequence

                              [GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTGCTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCCGGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAGAAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAAAGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCATTATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGTGCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGAGCGCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCTCTTGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGTGGATTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA]

[+] EMBL BX625177             [GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTGCTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCCGGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAGAAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAAAGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCATTATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGTGCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGAGCGCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCTCTTGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGTGGATTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA]




>consensus_2443#0
GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTG
CTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCC
GGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAG
AAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAA
AGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCAT
TATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGT
GCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATG
TGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGCGCAATACCGGGG
CGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCG
GCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGAGC
GCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCTCT
TGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGTGGA
TTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA

consensusID : consensus_2443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCAAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGAGCATTGAGGCAACACAATATATCAACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCTTCCTGCCGCCAACTCTTTCCTTCTTCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGTTGATTTTTTTGTTTGTTTTTGGGAGCGTTACTCGGTATAACGCTAATTACGATGGATTGTTCCGGTGGTGAGGAATCTGTGTCTTGTTCGTTGTTTTTGTTAATCGACAACATGGGGTGTTTTAAATCATGTTTTTCGGCAGAAACATGATAATCGCTCATTTTATAACAGATTGATTACAAAAACGCCTACTGTGACTTGGATAATGAATC]

[+] EMBL AL930208             [ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCAAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGAGCATTGAGGCAACACAATATATCAACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCTTCCTGCCGCCAACTCTTTCCTTCTTCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGTTGATTTTTTTGTTTGTTTTTGGGAGCGTTACTCGGTATAACGCTAATTACGATGGATTGTTCCGGTGGTGAGGAATCTGTGTCTTGTTCGTTGTTTTTGTTAATCGACAACATGGGGTGTTTTAAATCATGTTTTTCGGCAGAAACATGATAATCGCTCATTTTATAACAGATTGATTACAAAAACGCCTACTGTGACTTGGATAATGAATC]




>consensus_2443#1
ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCAAAAGCGATGG
AATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCAT
CGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGG
TAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGAGCATTGAGGCAACACAATATATCA
ACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCTTCCTGCCGCCAACTCTTTCCTTCT
TCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGTTGATTTTTTTGTTTGTTTTTGGGA
GCGTTACTCGGTATAACGCTAATTACGATGGATTGTTCCGGTGGTGAGGAATCTGTGTCT
TGTTCGTTGTTTTTGTTAATCGACAACATGGGGTGTTTTAAATCATGTTTTTCGGCAGAA
ACATGATAATCGCTCATTTTATAACAGATTGATTACAAAAACGCCTACTGTGACTTGGAT
AATGAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2443#0      GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTG 60
consensus_2443#1      ------------------------------------------------------------
                                                                                  

consensus_2443#0      CTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCC 120
consensus_2443#1      ------------------------------------------------------------
                                                                                  

consensus_2443#0      GGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAG 180
consensus_2443#1      ------------------------------------------------------------
                                                                                  

consensus_2443#0      AAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAA 240
consensus_2443#1      ------------------------------------------------------------
                                                                                  

consensus_2443#0      AGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCAT 300
consensus_2443#1      ------------------------------------------------------------
                                                                                  

consensus_2443#0      TATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGT 360
consensus_2443#1      ------------------------------------------------------------
                                                                                  

consensus_2443#0      GCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATG 420
consensus_2443#1      ------------------------ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATG 36
                                              **          ************************

consensus_2443#0      TGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTG--CGCAATACCGG 478
consensus_2443#1      TGCAGTAGATGCCAAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGG 96
                      ************* *********************************  ***********

consensus_2443#0      GGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTG 538
consensus_2443#1      GGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTG 156
                      ************************************************************

consensus_2443#0      CGGCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGA 598
consensus_2443#1      CGGCGTATTAGTGGCCAGTACCGGTAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGA 216
                      ******************************** ***************************

consensus_2443#0      GCGCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCT 658
consensus_2443#1      GCATTGAGGCAACACAATATATCAACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCT 276
                      **  ***** ***************************** ********************

consensus_2443#0      -CTTGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGT 717
consensus_2443#1      TCCTGCCGCCAACTCTTTCCTTCTTCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGT 336
                       * ******************************* ** **********************

consensus_2443#0      GGATTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA---------- 767
consensus_2443#1      TGATTTTTTTGTTT-GTTTTTGGGAGCGTTACTCGGTATAACGCTAATTACGATGGATTG 395
                       ********** ** * ***** ***************************          

consensus_2443#0      ------------------------------------------------------------
consensus_2443#1      TTCCGGTGGTGAGGAATCTGTGTCTTGTTCGTTGTTTTTGTTAATCGACAACATGGGGTG 455
                                                                                  

consensus_2443#0      ------------------------------------------------------------
consensus_2443#1      TTTTAAATCATGTTTTTCGGCAGAAACATGATAATCGCTCATTTTATAACAGATTGATTA 515
                                                                                  

consensus_2443#0      ---------------------------------
consensus_2443#1      CAAAAACGCCTACTGTGACTTGGATAATGAATC 548