cluster # 2449

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Anopheles gambiae
cluster # 2449 cluster # 2449 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2449#0 length = 436 sequences # 1

consensus_2449#1 length = 138 sequences # 1

consensusID : consensus_2449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTATCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCACGCCGACTAACCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTAGCTCTGTTCTCTGTGTCAGCCTTTTCCTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGGCAAGGCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGGTAGGTTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTTTCTAGCATCGTTCTACCAGC]

[+] EMBL BM643037             [ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTATCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCACGCCGACTAACCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTAGCTCTGTTCTCTGTGTCAGCCTTTTCCTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGGCAAGGCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGGTAGGTTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTTTCTAGCATCGTTCTACCAGC]




>consensus_2449#0
ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTA
TCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTG
TCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCACGCCGACTAACCCCCCTCATCAGCAT
CCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTAGCTCTGTTCTCTGTGTCAGCCTTTTC
CTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGGCAAG
GCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGGTAGG
TTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTTTCTA
GCATCGTTCTACCAGC

consensusID : consensus_2449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [CCGGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAACTGCCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCTGTGCTCTGTGTTAGCCTT]

[+] EMBL BM596095             [CCGGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAACTGCCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCTGTGCTCTGTGTTAGCCTT]




>consensus_2449#1
CCGGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAAC
TGCCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCT
GTGCTCTGTGTTAGCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2449#0      ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTA 60
consensus_2449#1      ------------------------------------------------------------
                                                                                  

consensus_2449#0      TCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTG 120
consensus_2449#1      ------------------------------------------CCGGCGAAAGTGTTTGTG 18
                                                                ** ***************

consensus_2449#0      TCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCA-CGCCGACTAACCCCCCTCATCAGCA 179
consensus_2449#1      TCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAACTG-CCCCCCTCATCAGCA 77
                      *************************** ****** **** ***  ***************

consensus_2449#0      TCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTA---GCTCTGTTCTCTGTGTCAGCCT 236
consensus_2449#1      TCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCTGTGCTCTGTGTTAGCCT 137
                      ***********************************   ******* ******** *****

consensus_2449#0      TTTCCTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGG 296
consensus_2449#1      T----------------------------------------------------------- 138
                      *                                                           

consensus_2449#0      CAAGGCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGG 356
consensus_2449#1      ------------------------------------------------------------
                                                                                  

consensus_2449#0      TAGGTTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTT 416
consensus_2449#1      ------------------------------------------------------------
                                                                                  

consensus_2449#0      TCTAGCATCGTTCTACCAGC 436
consensus_2449#1      --------------------