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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGCAGGGACAGTCGTGTGTTAACACAACACTCTCTCTCACACACTCAGGTCCACTCGTAGCAGACGTAGAACAGGAACCATGATGGCAAGATTTGGCTGGGAAAGAGAGTATAAAAAAACAGCATTGACCAGTTAGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTTGTATGTACCGACCAAGCAAGTAAAAAGTAGAAGAATGAGAGGAGCAAGAAATATGCGTTGCAAAAGGGGCACAAAAACGGTAGGACAACAGATAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTATCCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAAGTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATTTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTCCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTTTCGGCCCAGTCAACGAACGTCGTGTCCCGGTAGATTAGAGGAGT]
[+] EMBL BM591706 [CCGCAGGGACAGTCGTGTGTTAACACAACACTCTCTCTCACACACTCAGGTCCACTCGTAGCAGACGTAGAACAGGAACCATGATGGCAAGATTTGGCTGGGAAAGAGAGTATAAAAAAACAGCATTGACCAGTTAGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTTGTATGTACCGACCAAGCAAGTAAAAAGTAGAAGAATGAGAGGAGCAAGAAATATGCGTTGCAAAAGGGGCACAAAAACGGTAGGACAACAGATAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTATCCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAAGTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATTTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTCCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTTTCGGCCCAGTCAACGAACGTCGTGTCCCGGTAGATTAGAGGAGT]
consensusID : consensus_2468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[AGAATCGCCCGAGGTAAAGAGAGTGTAAAAACAGCAGTGACCAGTTTGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTGTATGTACCGACCAAGCAAGTAAAAAGTAAAAGGAGAGTAGAGGAGCAAGAAATATGCGTGCAATAGGGGCACAAAAACGGTAGGACAACGGACAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTACCCTCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAACTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATGTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTTCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTATTCGGCCCAGTCAACGAACGTCGTTNTC]
[+] EMBL AL930419 [AGAATCGCCCGAGGTAAAGAGAGTGTAAAAACAGCAGTGACCAGTTTGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTGTATGTACCGACCAAGCAAGTAAAAAGTAAAAGGAGAGTAGAGGAGCAAGAAATATGCGTGCAATAGGGGCACAAAAACGGTAGGACAACGGACAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTACCCTCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAACTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATGTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTTCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTATTCGGCCCAGTCAACGAACGTCGTTNTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2468#0 CCGCAGGGACAGTCGTGTGTTAACACAACACTCTCTCTCACACACTCAGGTCCACTCGTA 60
consensus_2468#1 ------------------------------------------------------------
consensus_2468#0 GCAGACGTAGAACAGGAACCATGATGGCAAGATTTGGCTGGGAAAGAGAGTATAAAAAAA 120
consensus_2468#1 -----------------------------AGAATCGCCCGAGGTAAAGAGAGTGTAAAAA 31
*** * * * * * * **** * *****
consensus_2468#0 CAGCATTGACCAGTTAGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTTGTATG 180
consensus_2468#1 CAGCAGTGACCAGTTTGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTT-GTATG 90
***** ********* ************************************** *****
consensus_2468#0 TACCGACCAAGCAAGTAAAAAGTAGAAGAATG--AGAGGAGCAAGAAATATGCGTTGCAA 238
consensus_2468#1 TACCGACCAAGCAAGTAAAAAGTAAAAGGAGAGTAGAGGAGCAAGAAATATGCGT-GCAA 149
************************ *** * ********************* ****
consensus_2468#0 AAGGGGCACAAAAACGGTAGGACAACAGATAACCGCATGGATACGATTAGCATATAGGTG 298
consensus_2468#1 TAGGGGCACAAAAACGGTAGGACAACGGACAACCGCATGGATACGATTAGCATATAGGTG 209
************************* ** ******************************
consensus_2468#0 TCCTTCAACTCTTTCTATCCTCTCT--TTCTCTCTCTACCGTGGCCAAACGATCCCACCA 356
consensus_2468#1 TCCTTCAACTCTTTCTACCCTCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCA 269
***************** ******* *********************************
consensus_2468#0 TTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAAGTAGAGTAG 416
consensus_2468#1 TTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAACTAGAGTAG 329
*************************************************** ********
consensus_2468#0 AATGATTGCAGATCGCAGGGTTGTCTTTATTTTTAGTTGATTGTAGAGCACGTGTAGAGA 476
consensus_2468#1 AATGATTGCAGATCGCAGGGTTGTCTTTATGTTTAGTTGATTGTAGAGCACGTGTAGAGA 389
****************************** *****************************
consensus_2468#0 TGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCT 536
consensus_2468#1 TGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCT 449
************************************************************
consensus_2468#0 GCTCTCGAACGGCGGATGTATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTT 596
consensus_2468#1 GCTCTCGAACGGCGGATGTATG----TGAATGCATCGGTTCGGGATGATCTTGAATGTTT 505
********************** **********************************
consensus_2468#0 TCCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTT-TTCGGCCCAGTCAA 655
consensus_2468#1 TTCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTATTCGGCCCAGTCAA 565
* ******************************************* **************
consensus_2468#0 CGAACGTCGTGTCCCGGTAGATTAGAGGAGT 686
consensus_2468#1 CGAACGTCGTTNTC----------------- 579
********** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||