These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [GATCGCCCCGAGGTTNTGTTTTTTAGAGTTTATAGCGCAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATTTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTTGTTTTTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGCCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGTGTCTTCCCTGCAAAAAACCTTCACGGCAGTCGGCGAAGGTAGTCACAACGGCGGGGCGGGTGGCGGCGATCCGCGCACATCCGCGGCCGCCGTGTGGTGGAGATCGATCTGGTGGTGC] [+] EMBL AL930442 [GATCGCCCCGAGGTTNTGTTTTTTAGAGTTTATAGCGCAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATTTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTTGTTTTTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGCCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGTGTCTTCCCTGCAAAAAACCTTCACGGCAGTCGGCGAAGGTAGTCACAACGGCGGGGCGGGTGGCGGCGATCCGCGCACATCCGCGGCCGCCGTGTGGTGGAGATCGATCTGGTGGTGC] consensusID : consensus_2471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATAGCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCGTAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC] [+] EMBL AL931783 [CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATAGCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCGTAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2471#0 -----------------------GATCGCCCCGAGGTTN--TGTTTTTTAGAGTTT-ATA 34 consensus_2471#1 CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATA 60 * * * * ** *************** *** consensus_2471#0 GCGCAAAA-TGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCC 93 consensus_2471#1 GCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCC 120 ******** *************************************************** consensus_2471#0 TGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGAT-TTTAGGCGTT 152 consensus_2471#1 TGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTT 180 ************************************************* ********** consensus_2471#0 GTGGTGCTGCTGTACGTGGTGCTGTTGTTTT--TCGACGGATTTTTTAAGAGCTGCATGC 210 consensus_2471#1 GTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGC 240 ************************* ** ** *************************** consensus_2471#0 ACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTC 270 consensus_2471#1 ACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTC 300 ************************************************************ consensus_2471#0 AGTGGCACACCACGGCCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAA 330 consensus_2471#1 AGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAA 360 *************** ******************************************** consensus_2471#0 TACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCA 390 consensus_2471#1 TACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCA 420 ************************************************************ consensus_2471#0 TCGTGATGATTGTCG-TGTCTTCCCTGCAAA-AAACCTTCACGGC-AGTCGGCGAAGG-- 445 consensus_2471#1 TCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCG 480 *************** *************** ************* ********** * consensus_2471#0 TAGTCACAAC-GGCGGGGCGGGTGGCG-GCGATCCGCGCACATCCGCGGCCGCCGTGTGG 503 consensus_2471#1 TAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC------------------------ 516 ********** **************** **** * consensus_2471#0 TGGAGATCGATCTGGTGGTGC 524 consensus_2471#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||