cluster # 249

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Anopheles gambiae
cluster # 249 cluster # 249 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_249#0 length = 839 sequences # 1

consensus_249#1 length = 491 sequences # 1

consensusID : consensus_249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 839
fasta sequence

                              [GGCAAGAATCGGCACGTNGGCGACTTACGCGTGTTTGTTTNCCATTTACCAACCCGAAAAGTATTACCGGTGCGTGGCAAGTTTTGGTATGTCTGCTTCGTCTTTGGCAGGCGAAGTGACACAAAAGTGCTTGATCATCTTGATAGCGGGCAAATGGTATAATGTATAGAATTGCACAAAAAATACGCGCTCCATCATTTTACAAGCTCTTGAATCTAACAATTCGAAACGCTTTATTAAAAGAACCAACAAAACTAAAGCTCACTCGCCTGCAGGGAATGCCGCGCATTGGGAACGTGTGAGCGTGTGTGAAATTAGACTATTGTAGCGCGACCCTGGGCAAGTGGCAAAGTGAACTCAAAAAGGTGTGCAGAAACAAACAAAAAATCATCACCTCCGGACATAAAATTCAATACAAGACAAGTACAGCAGCAAAACCACGATCATCAACAANAACAAAGCCCAATAATCCCACTACAAAGCAGTCAATCGTTAGTCGATNAAGGAACGGAGCAATGGTGATGAAACTTTGGCTCTGGCATTGGAAAATGGCAACGAGAGACAGGAACTAGACGCGAGCATGAGGAAACAGACACTCAGATCGACAANGGGGGGCAACGNNGGGTCAAAACCGGGGGGGCAAAACCCCCCNGGGGTAANAGNAAACACAGCATGGNTGGGCAAGGACAATTCCAAGGAACTCTGGACACCNATTTACAANANAGCGCCNATGGGGCAGAGCGAAGCCACCGATAAAAAGGGCAGCAGAGCCATCCCGTAAACTCACCACAACTGGGCACTCGTCGAAACCGGCANAGCCCACACATNATCTGGGGGCT]

[+] EMBL BX467203             [GGCAAGAATCGGCACGTNGGCGACTTACGCGTGTTTGTTTNCCATTTACCAACCCGAAAAGTATTACCGGTGCGTGGCAAGTTTTGGTATGTCTGCTTCGTCTTTGGCAGGCGAAGTGACACAAAAGTGCTTGATCATCTTGATAGCGGGCAAATGGTATAATGTATAGAATTGCACAAAAAATACGCGCTCCATCATTTTACAAGCTCTTGAATCTAACAATTCGAAACGCTTTATTAAAAGAACCAACAAAACTAAAGCTCACTCGCCTGCAGGGAATGCCGCGCATTGGGAACGTGTGAGCGTGTGTGAAATTAGACTATTGTAGCGCGACCCTGGGCAAGTGGCAAAGTGAACTCAAAAAGGTGTGCAGAAACAAACAAAAAATCATCACCTCCGGACATAAAATTCAATACAAGACAAGTACAGCAGCAAAACCACGATCATCAACAANAACAAAGCCCAATAATCCCACTACAAAGCAGTCAATCGTTAGTCGATNAAGGAACGGAGCAATGGTGATGAAACTTTGGCTCTGGCATTGGAAAATGGCAACGAGAGACAGGAACTAGACGCGAGCATGAGGAAACAGACACTCAGATCGACAANGGGGGGCAACGNNGGGTCAAAACCGGGGGGGCAAAACCCCCCNGGGGTAANAGNAAACACAGCATGGNTGGGCAAGGACAATTCCAAGGAACTCTGGACACCNATTTACAANANAGCGCCNATGGGGCAGAGCGAAGCCACCGATAAAAAGGGCAGCAGAGCCATCCCGTAAACTCACCACAACTGGGCACTCGTCGAAACCGGCANAGCCCACACATNATCTGGGGGCT]




>consensus_249#0
GGCAAGAATCGGCACGTNGGCGACTTACGCGTGTTTGTTTNCCATTTACCAACCCGAAAA
GTATTACCGGTGCGTGGCAAGTTTTGGTATGTCTGCTTCGTCTTTGGCAGGCGAAGTGAC
ACAAAAGTGCTTGATCATCTTGATAGCGGGCAAATGGTATAATGTATAGAATTGCACAAA
AAATACGCGCTCCATCATTTTACAAGCTCTTGAATCTAACAATTCGAAACGCTTTATTAA
AAGAACCAACAAAACTAAAGCTCACTCGCCTGCAGGGAATGCCGCGCATTGGGAACGTGT
GAGCGTGTGTGAAATTAGACTATTGTAGCGCGACCCTGGGCAAGTGGCAAAGTGAACTCA
AAAAGGTGTGCAGAAACAAACAAAAAATCATCACCTCCGGACATAAAATTCAATACAAGA
CAAGTACAGCAGCAAAACCACGATCATCAACAANAACAAAGCCCAATAATCCCACTACAA
AGCAGTCAATCGTTAGTCGATNAAGGAACGGAGCAATGGTGATGAAACTTTGGCTCTGGC
ATTGGAAAATGGCAACGAGAGACAGGAACTAGACGCGAGCATGAGGAAACAGACACTCAG
ATCGACAANGGGGGGCAACGNNGGGTCAAAACCGGGGGGGCAAAACCCCCCNGGGGTAAN
AGNAAACACAGCATGGNTGGGCAAGGACAATTCCAAGGAACTCTGGACACCNATTTACAA
NANAGCGCCNATGGGGCAGAGCGAAGCCACCGATAAAAAGGGCAGCAGAGCCATCCCGTA
AACTCACCACAACTGGGCACTCGTCGAAACCGGCANAGCCCACACATNATCTGGGGGCT

consensusID : consensus_249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [AAAAATCATCACCTCCGGACATAAAATTCAATACAAGACAAGTACAGCAGCAAAACCACGATCATCAACAACAACAACCCCAATAATCCCACTACAAACAGTCAATCGTTAGTGATAAAGGAAGGAGAATGGTGATGAAATTTGCTCTGGATTGGAAAATGGCTAGCGAGAAGGAACTAGACGCGAGATGAAGAAACAGACACTCCGATCGAAGGGGCAGTGTAACGGGGCAACCCCGGTAAGAAAAGATGTGCAGCATTAAGAATGAACATTAGAGAGCCATGGGACGGGAGCAGCTAAGGAGAGCATCGTAATACAAATGGATGTGAACGAACACATATTGGTTATTTAGTAACATTACATTTACAGGAAACGAAAACAATAACATTATTAGACCGTGTTTGTAAGGAAAGCAGACAAGGAAAAAGTAAACATACAATTAAACCGTAGACTAGTTATAATTACTTGATATACATTTTTTCACAAGAAAA]

[+] EMBL BX612371             [AAAAATCATCACCTCCGGACATAAAATTCAATACAAGACAAGTACAGCAGCAAAACCACGATCATCAACAACAACAACCCCAATAATCCCACTACAAACAGTCAATCGTTAGTGATAAAGGAAGGAGAATGGTGATGAAATTTGCTCTGGATTGGAAAATGGCTAGCGAGAAGGAACTAGACGCGAGATGAAGAAACAGACACTCCGATCGAAGGGGCAGTGTAACGGGGCAACCCCGGTAAGAAAAGATGTGCAGCATTAAGAATGAACATTAGAGAGCCATGGGACGGGAGCAGCTAAGGAGAGCATCGTAATACAAATGGATGTGAACGAACACATATTGGTTATTTAGTAACATTACATTTACAGGAAACGAAAACAATAACATTATTAGACCGTGTTTGTAAGGAAAGCAGACAAGGAAAAAGTAAACATACAATTAAACCGTAGACTAGTTATAATTACTTGATATACATTTTTTCACAAGAAAA]




>consensus_249#1
AAAAATCATCACCTCCGGACATAAAATTCAATACAAGACAAGTACAGCAGCAAAACCACG
ATCATCAACAACAACAACCCCAATAATCCCACTACAAACAGTCAATCGTTAGTGATAAAG
GAAGGAGAATGGTGATGAAATTTGCTCTGGATTGGAAAATGGCTAGCGAGAAGGAACTAG
ACGCGAGATGAAGAAACAGACACTCCGATCGAAGGGGCAGTGTAACGGGGCAACCCCGGT
AAGAAAAGATGTGCAGCATTAAGAATGAACATTAGAGAGCCATGGGACGGGAGCAGCTAA
GGAGAGCATCGTAATACAAATGGATGTGAACGAACACATATTGGTTATTTAGTAACATTA
CATTTACAGGAAACGAAAACAATAACATTATTAGACCGTGTTTGTAAGGAAAGCAGACAA
GGAAAAAGTAAACATACAATTAAACCGTAGACTAGTTATAATTACTTGATATACATTTTT
TCACAAGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_249#0      GGCAAGAATCGGCACGTNGGCGACTTACGCGTGTTTGTTTNCCATTTACCAACCCGAAAA 60
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GTATTACCGGTGCGTGGCAAGTTTTGGTATGTCTGCTTCGTCTTTGGCAGGCGAAGTGAC 120
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      ACAAAAGTGCTTGATCATCTTGATAGCGGGCAAATGGTATAATGTATAGAATTGCACAAA 180
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      AAATACGCGCTCCATCATTTTACAAGCTCTTGAATCTAACAATTCGAAACGCTTTATTAA 240
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      AAGAACCAACAAAACTAAAGCTCACTCGCCTGCAGGGAATGCCGCGCATTGGGAACGTGT 300
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GAGCGTGTGTGAAATTAGACTATTGTAGCGCGACCCTGGGCAAGTGGCAAAGTGAACTCA 360
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      AAAAGGTGTGCAGAAACAAACAAAAAATCATCACCTCCGGACATAAAATTCAATACAAGA 420
consensus_249#1      ----------------------AAAAATCATCACCTCCGGACATAAAATTCAATACAAGA 38
                                           **************************************

consensus_249#0      CAAGTACAGCAGCAAAACCACGATCATCAACAANAACAAAGCCCAATAATCCCACTACAA 480
consensus_249#1      CAAGTACAGCAGCAAAACCACGATCATCAACAACAACAAC-CCCAATAATCCCACTACAA 97
                     ********************************* *****  *******************

consensus_249#0      AGCAGTCAATCGTTAGTCGATNAAGGAACGGAGCAATGGTGATGAAACTTTGGCTCTGGC 540
consensus_249#1      A-CAGTCAATCGTTAGT-GATAAAGGAA-GGAG-AATGGTGATGAAATTT--GCTCTGG- 150
                     * *************** *** ****** **** ************* **  ******* 

consensus_249#0      ATTGGAAAATGGCAACGAGAGACAGGAACTAGACGCGAGCATGAGGAAACAGACACTCAG 600
consensus_249#1      ATTGGAAAATGGCTA-GCGAGA-AGGAACTAGACGCGAG-ATGAAGAAACAGACACTCCG 207
                     ************* * * **** **************** **** ************* *

consensus_249#0      ATCGACAANGGGGGGCAACGNNGGGTCAAAACCGGGGGGGCAAAACCCCCCNGGGGTAAN 660
consensus_249#1      ATCGAAGGGGCAGTGTAACGGGGC----AACCCCGGTAAGAAAAGATGTGCAGCATTAAG 263
                     *****    *  * * ****  *     ** ** **   * ***      * *   *** 

consensus_249#0      AGNAAACACAGCATGGNT---GGGCAAGGACAATTCCAAGGAACTCTG-GACACCNATT- 715
consensus_249#1      AATGAACATTAGAGAGCCATGGGACGGGAGCAGCTAAGGAGAGCATCGTAATACAAATGG 323
                     *   ****    *  *     ** *  *  **  *     ** *   *  * **  **  

consensus_249#0      -TACAANANAGCGCCNATGGGGCAGAGCGAAGCCACCGATAAAAAGGGCAGCAGAGCCAT 774
consensus_249#1      ATGTGAACGAACACATATTGGTTATTTAGTAACATTACATTTACAGGAAACGAAAACAAT 383
                      *   *   * * *  ** **  *    * * *     **  * ***  *  * * * **

consensus_249#0      CCCGTAAACTCACCACAACTG-GGCACTCGTCGAAACCGGCANAGCCCACACATNAT--- 830
consensus_249#1      AACATTATTAGACCGTGTTTGTAAGGAAAGCAGACAAGGAAAAAGTAAACATACAATTAA 443
                       * * *    ***     **        *  ** *  *  * **   *** *  **   

consensus_249#0      -CTGGGGGCT-------------------------------------- 839
consensus_249#1      ACCGTAGACTAGTTATAATTACTTGATATACATTTTTTCACAAGAAAA 491
                      * *  * **