cluster # 2490

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Anopheles gambiae
cluster # 2490 cluster # 2490 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2490#0 length = 680 sequences # 1

consensus_2490#1 length = 450 sequences # 1

consensusID : consensus_2490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [CCGCCCCACGATAGTAGTCCTGACAATTGATTCCATCCAAAACGGTGTTATTACGTGTGTTTGTGCGTGTGTATGAGTGTTCGTGAGTGTGTGCGCGTGAGGAGGCATAAAGTGGGCAGGACACCATAGAACGACCGGGATGAGCATGGCAGCTTGACACACCCAATCAGTTTCTGCTTTATCTGTGAATACGAAATACGGCATCGTTCTGGCAGATGGACATAGATTTGCATTCCAGCAAGAAATTGAACATACTTGAGGCATCGATTGTTTTGTCGAATAACTTGTTTTCAATTTACACACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCATGCGTAATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAACGCACACAGACCCACTCAGTAGTAGCATAGAGTTAGTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAATTGAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGATTATTATTATTAATATTATTATCATCTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGTTTAAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCCTTCAGTATAATTCTCTTCTTCGCACGA]

[+] EMBL BM595590             [CCGCCCCACGATAGTAGTCCTGACAATTGATTCCATCCAAAACGGTGTTATTACGTGTGTTTGTGCGTGTGTATGAGTGTTCGTGAGTGTGTGCGCGTGAGGAGGCATAAAGTGGGCAGGACACCATAGAACGACCGGGATGAGCATGGCAGCTTGACACACCCAATCAGTTTCTGCTTTATCTGTGAATACGAAATACGGCATCGTTCTGGCAGATGGACATAGATTTGCATTCCAGCAAGAAATTGAACATACTTGAGGCATCGATTGTTTTGTCGAATAACTTGTTTTCAATTTACACACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCATGCGTAATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAACGCACACAGACCCACTCAGTAGTAGCATAGAGTTAGTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAATTGAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGATTATTATTATTAATATTATTATCATCTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGTTTAAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCCTTCAGTATAATTCTCTTCTTCGCACGA]




>consensus_2490#0
CCGCCCCACGATAGTAGTCCTGACAATTGATTCCATCCAAAACGGTGTTATTACGTGTGT
TTGTGCGTGTGTATGAGTGTTCGTGAGTGTGTGCGCGTGAGGAGGCATAAAGTGGGCAGG
ACACCATAGAACGACCGGGATGAGCATGGCAGCTTGACACACCCAATCAGTTTCTGCTTT
ATCTGTGAATACGAAATACGGCATCGTTCTGGCAGATGGACATAGATTTGCATTCCAGCA
AGAAATTGAACATACTTGAGGCATCGATTGTTTTGTCGAATAACTTGTTTTCAATTTACA
CACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCAT
GCGTAATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAACGCACACAGACCCACTCAGT
AGTAGCATAGAGTTAGTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAATT
GAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGATTA
TTATTATTAATATTATTATCATCTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGTTT
AAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCCTTCAGTA
TAATTCTCTTCTTCGCACGA

consensusID : consensus_2490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [CCGCCCACGCGTCCGGGCATCGATTGTTTTGTCGAATAACTTGCTTTCAAATTATACACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCATGCGTCATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAAACGCACACAGACCCACTCAGTAGTAGCATAGAGTTATTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAATTGAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGATTATTATTATTAATATTATTATCATTTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGGTTAAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCTTCAGTATAATTCTCTTCTTCGCACGAGACACACAATAAAC]

[+] EMBL BM628883             [CCGCCCACGCGTCCGGGCATCGATTGTTTTGTCGAATAACTTGCTTTCAAATTATACACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCATGCGTCATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAAACGCACACAGACCCACTCAGTAGTAGCATAGAGTTATTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAATTGAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGATTATTATTATTAATATTATTATCATTTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGGTTAAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCTTCAGTATAATTCTCTTCTTCGCACGAGACACACAATAAAC]




>consensus_2490#1
CCGCCCACGCGTCCGGGCATCGATTGTTTTGTCGAATAACTTGCTTTCAAATTATACACT
GAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCATGCGT
CATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAAACGCACACAGACCCACTCAGTAGT
AGCATAGAGTTATTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAATTGAG
GCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGATTATTA
TTATTAATATTATTATCATTTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGGTTAAA
AAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCTTCAGTATAAT
TCTCTTCTTCGCACGAGACACACAATAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2490#0      CCGCCCCACGATAGTAGTCCTGACAATTGATTCCATCCAAAACGGTGTTATTACGTGTGT 60
consensus_2490#1      ------------------------------------------------------------
                                                                                  

consensus_2490#0      TTGTGCGTGTGTATGAGTGTTCGTGAGTGTGTGCGCGTGAGGAGGCATAAAGTGGGCAGG 120
consensus_2490#1      ------------------------------------------------------------
                                                                                  

consensus_2490#0      ACACCATAGAACGACCGGGATGAGCATGGCAGCTTGACACACCCAATCAGTTTCTGCTTT 180
consensus_2490#1      ------------------------------------------------------------
                                                                                  

consensus_2490#0      ATCTGTGAATACGAAATACGGCATCGTTCTGGCAGATGGACATAGATTTGCATTCCAGCA 240
consensus_2490#1      ------------------------------------------------------------
                                                                                  

consensus_2490#0      AGAAATTGAACATAC-TTGAGGCATCGATTGTTTTGTCGAATAACTTGTTTTCAATTTAC 299
consensus_2490#1      -----CCGCCCACGCGTCCGGGCATCGATTGTTTTGTCGAATAACTTGCTTTCAAATTAT 55
                             *  **  * *   **************************** ****** *** 

consensus_2490#0      ACACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCA 359
consensus_2490#1      ACACTGAAGATTTACGCTGCTAAATACGTTCACAAGACAAGACAAGAGCATCGGAAAGCA 115
                      ************************************************************

consensus_2490#0      TGCGTAATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAA-CGCACACAGACCCACTCA 418
consensus_2490#1      TGCGTCATAGTTTTAGTAGTAAACTTTGCCCGAAAAAAAAAACGCACACAGACCCACTCA 175
                      ***** *********************************** ******************

consensus_2490#0      GTAGTAGCATAGAGTTAGTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAA 478
consensus_2490#1      GTAGTAGCATAGAGTTATTCCGCCCGCATCCTTAATTGACAATCGCTAGACCAACTGAAA 235
                      ***************** ******************************************

consensus_2490#0      TTGAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGAT 538
consensus_2490#1      TTGAGGCATTTTTAATTTAATTATAACTATTGCTACGTTTAATATTATTATTATTATGAT 295
                      ************************************************************

consensus_2490#0      TATTATTATTAATATTATTATCATCTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGT 598
consensus_2490#1      TATTATTATTAATATTATTATCATTTAGCTTCGACTACGTTGTGCTCAAACGGGCCTAGG 355
                      ************************ ********************************** 

consensus_2490#0      TTAAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTCCTTCAG 658
consensus_2490#1      TTAAAAAGATAATGGGCGGCGTGAAGGTCGGTCTTAGGAGAGTACGGTTTTTTC-TTCAG 414
                      ****************************************************** *****

consensus_2490#0      TATAATTCTCTTCTTCGCACGA-------------- 680
consensus_2490#1      TATAATTCTCTTCTTCGCACGAGACACACAATAAAC 450
                      **********************