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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA]
[+] EMBL BM620341 [CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA]
consensusID : consensus_2494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGGTTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCGGAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTGCAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAAAAAATGCTTG]
[+] EMBL BM595432 [CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGGTTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCGGAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTGCAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAAAAAATGCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2494#0 ------------------------------------------------------------
consensus_2494#1 CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGG 60
consensus_2494#0 ---------------------------------------CCGTTAACCGGGGGTAGCCCC 21
consensus_2494#1 TTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCG 120
* ********* ********
consensus_2494#0 GAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTA 81
consensus_2494#1 GAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTG 180
*************** ***** ***** *** ****** ********************
consensus_2494#0 CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA 141
consensus_2494#1 CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA 240
************************************************************
consensus_2494#0 TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGG 201
consensus_2494#1 TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGG 300
********************************************** *************
consensus_2494#0 TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC 261
consensus_2494#1 TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC 360
************************************************************
consensus_2494#0 TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA 321
consensus_2494#1 TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA 420
************************************************************
consensus_2494#0 TATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACA- 380
consensus_2494#1 TATAGAAATACT------------TGGAGTTGGGTAGAGCTGATGAACACACACACACAC 468
*********** ***********************************
consensus_2494#0 -GGACACTGTAAAAA-TGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTG 438
consensus_2494#1 AGGACACTGTAAAAAATGCTTG-------------------------------------- 490
************** ******
consensus_2494#0 CCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAA 498
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 AACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATA 558
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 GTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGAT 618
consensus_2494#1 ------------------------------------------------------------
consensus_2494#0 AAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA 663
consensus_2494#1 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||