cluster # 2498

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Anopheles gambiae
cluster # 2498 cluster # 2498 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2498#0 length = 692 sequences # 1

consensus_2498#1 length = 628 sequences # 1

consensusID : consensus_2498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAAAAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACCTCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTCCTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAACGTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCCATAGTAAGCAACGCACTGCCGGTCGATCAGCCGGCCACGAACGATTCCGGTCGGGTTGAAGCGGCCACAGCACGGCCCACCACCGTCGGCAGCGGCAATGAGCAGCGCTGCGGCCGACGGCAACATTCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGGCGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACCAGCTCATCCGGAACGGTTCGTACGTGTACCACTGTGGAGGGGCGCTCCTCAACCGAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACACAGGA]

[+] EMBL BM646908             [CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAAAAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACCTCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTCCTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAACGTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCCATAGTAAGCAACGCACTGCCGGTCGATCAGCCGGCCACGAACGATTCCGGTCGGGTTGAAGCGGCCACAGCACGGCCCACCACCGTCGGCAGCGGCAATGAGCAGCGCTGCGGCCGACGGCAACATTCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGGCGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACCAGCTCATCCGGAACGGTTCGTACGTGTACCACTGTGGAGGGGCGCTCCTCAACCGAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACACAGGA]




>consensus_2498#0
CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAA
AAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACC
TCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTC
CTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAAC
GTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCC
ATAGTAAGCAACGCACTGCCGGTCGATCAGCCGGCCACGAACGATTCCGGTCGGGTTGAA
GCGGCCACAGCACGGCCCACCACCGTCGGCAGCGGCAATGAGCAGCGCTGCGGCCGACGG
CAACATTCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGGCGACGGTATCAGTCAG
GCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACCAGCTC
ATCCGGAACGGTTCGTACGTGTACCACTGTGGAGGGGCGCTCCTCAACCGAAGCGTCGTC
GTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCGAATCGGTTCGTTGTGTAC
GCTGGCGACTGGGACCGGCGACACACACAGGA

consensusID : consensus_2498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [AGGCCAGGAATTCCGCCCCGAGTGTTTTTCGAGCCCATCTGGTAAGCAACTGCACTGCTGGTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCGGGTTGAAGCTGGCCACAGCACTGGCCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTGCTGTGCCTGACTGGCAACATTCCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGGCTGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACAGCTCATCCGGAACGGTTCGTACGTGTNACCACTGTGGACGGGCGCTCCTCAACAAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACGCAGGAACGGCTGGCAACCAGGGAGCGAACCGTCAGTAGGGTCCTGGTACAACCGAACTACTACTCCGGCGCACTGTTCAACGACCTCGCGCTACTGTCTTCAGCGAACCGTTCAACGACACGGTAGCGAACGTGGAACCGGTGTGTCTGAGCAGCCCTCTGGCACGGACTACATTCCCCCGGACAACTGG]

[+] EMBL AL930746             [AGGCCAGGAATTCCGCCCCGAGTGTTTTTCGAGCCCATCTGGTAAGCAACTGCACTGCTGGTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCGGGTTGAAGCTGGCCACAGCACTGGCCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTGCTGTGCCTGACTGGCAACATTCCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGGCTGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACAGCTCATCCGGAACGGTTCGTACGTGTNACCACTGTGGACGGGCGCTCCTCAACAAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACGCAGGAACGGCTGGCAACCAGGGAGCGAACCGTCAGTAGGGTCCTGGTACAACCGAACTACTACTCCGGCGCACTGTTCAACGACCTCGCGCTACTGTCTTCAGCGAACCGTTCAACGACACGGTAGCGAACGTGGAACCGGTGTGTCTGAGCAGCCCTCTGGCACGGACTACATTCCCCCGGACAACTGG]




>consensus_2498#1
AGGCCAGGAATTCCGCCCCGAGTGTTTTTCGAGCCCATCTGGTAAGCAACTGCACTGCTG
GTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCGGGTTGAAGCTGGCCACAGCACTGG
CCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTGCTGTGCCTGACTGGCAACATTCCC
GTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGGCTGACGGTATCAGTCAGGCCGTGG
CCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACAGCTCATCCGGAA
CGGTTCGTACGTGTNACCACTGTGGACGGGCGCTCCTCAACAAAGCGTCGTCGTGACAGC
GGCTCACTGTGTATCGAACAACGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGAC
TGGGACCGGCGACACACGCAGGAACGGCTGGCAACCAGGGAGCGAACCGTCAGTAGGGTC
CTGGTACAACCGAACTACTACTCCGGCGCACTGTTCAACGACCTCGCGCTACTGTCTTCA
GCGAACCGTTCAACGACACGGTAGCGAACGTGGAACCGGTGTGTCTGAGCAGCCCTCTGG
CACGGACTACATTCCCCCGGACAACTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2498#0      CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAA 60
consensus_2498#1      ------------------------------------------------------------
                                                                                  

consensus_2498#0      AAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACC 120
consensus_2498#1      ------------------------------------------------------------
                                                                                  

consensus_2498#0      TCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTC 180
consensus_2498#1      ------------------------------------------------------------
                                                                                  

consensus_2498#0      CTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAAC 240
consensus_2498#1      ------------------------------------------------------------
                                                                                  

consensus_2498#0      GTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCC 300
consensus_2498#1      ----------------------AGGCCAGGAATTCCGCCCCGAGTGTTT--TTCGAGCCC 36
                                             *     **    *   * *   * *   *********

consensus_2498#0      AT--AGTAAGCAAC-GCACTGCCGGTCGATC-AGCCGG--CCACGAACGATTCC-GGTCG 353
consensus_2498#1      ATCTGGTAAGCAACTGCACTGCTGGTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCG 96
                      **   ********* ******* ******** **** *  ************** *****

consensus_2498#0      GGTTGAAGC-GGCCACAGCACGGCCCACCACCGTCGGCAGC-GGCAATGAGCAGC----G 407
consensus_2498#1      GGTTGAAGCTGGCCACAGCACTGGCCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTG 156
                      ********* *********** * ****  * ********* *************    *

consensus_2498#0      CTGCGGCCGAC-GGCAACATTCC-GTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGG- 464
consensus_2498#1      CTGTGCCTGACTGGCAACATTCCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGG 216
                      *** * * *** *********** ********************************* * 

consensus_2498#0      -CGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGG 523
consensus_2498#1      CTGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGG 276
                        **********************************************************

consensus_2498#0      TGGCCATCCACCAGCTCATCCGGAACGGTTCGTACGTGTA-CCACTGTGGAGGGGCGCTC 582
consensus_2498#1      TGGCCATCCAC-AGCTCATCCGGAACGGTTCGTACGTGTNACCACTGTGGACGGGCGCTC 335
                      *********** ***************************  ********** ********

consensus_2498#0      CTCAACCGAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCG 642
consensus_2498#1      CTCAAC-AAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAAC-GCTTGCACCCG 393
                      ******  **************************************** ***********

consensus_2498#0      AATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACACAGGA---------- 692
consensus_2498#1      AATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACGCAGGAACGGCTGGCA 453
                      ******************************************** *****          

consensus_2498#0      ------------------------------------------------------------
consensus_2498#1      ACCAGGGAGCGAACCGTCAGTAGGGTCCTGGTACAACCGAACTACTACTCCGGCGCACTG 513
                                                                                  

consensus_2498#0      ------------------------------------------------------------
consensus_2498#1      TTCAACGACCTCGCGCTACTGTCTTCAGCGAACCGTTCAACGACACGGTAGCGAACGTGG 573
                                                                                  

consensus_2498#0      -------------------------------------------------------
consensus_2498#1      AACCGGTGTGTCTGAGCAGCCCTCTGGCACGGACTACATTCCCCCGGACAACTGG 628