cluster # 250

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Anopheles gambiae
cluster # 250 cluster # 250 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_250#0 length = 796 sequences # 1

consensus_250#1 length = 648 sequences # 1

consensusID : consensus_250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence

                              [GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGCTCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCAAATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCGTCCATCAATGCAGGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCTTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACAGCGCGTAGCTGTAAGTTTATACCGGTTTTAATTATTTTCTAATTTATGATTCCATACGTGGNCACGTTAGGAAGATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGGGCAAAAACTGGNGCGTTTTAGCTCATCTTGAGAATAG]

[+] EMBL BX626079             [GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGCTCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCAAATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCGTCCATCAATGCAGGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCTTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACAGCGCGTAGCTGTAAGTTTATACCGGTTTTAATTATTTTCTAATTTATGATTCCATACGTGGNCACGTTAGGAAGATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGGGCAAAAACTGGNGCGTTTTAGCTCATCTTGAGAATAG]




>consensus_250#0
GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATA
CAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGC
TCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCA
AATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGC
CGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCGTCCATCAATGCA
GGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACA
CAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCA
TCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCT
TAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCA
GGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAAGCGGTGAATTGTGCCATATGCTTAT
CATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACAGCGCGTAGCTGTAA
GTTTATACCGGTTTTAATTATTTTCTAATTTATGATTCCATACGTGGNCACGTTAGGAAG
ATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGGGCAAAAACTGGNGCGTTTTAG
CTCATCTTGAGAATAG

consensusID : consensus_250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGAGCAGATGGGTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCTTCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACCAATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCCATACGTGGCCACGTTAGGAAGATTTGCCCAGGAAGGAACAAACTGCTT]

[+] EMBL BM644045             [CCGAGCAGATGGGTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCTTCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACCAATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCCATACGTGGCCACGTTAGGAAGATTTGCCCAGGAAGGAACAAACTGCTT]




>consensus_250#1
CCGAGCAGATGGGTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACA
TGTGAAATAATACAAATCTTCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGC
CGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACC
AATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTAC
CAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCC
CAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAG
AAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTG
TAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGT
GAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTA
ACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCC
ATACGTGGCCACGTTAGGAAGATTTGCCCAGGAAGGAACAAACTGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_250#0      GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATA 60
consensus_250#1      ------------------------------------------------------------
                                                                                 

consensus_250#0      CAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGC 120
consensus_250#1      -------------------------------------------CCGAGCAGATGGGTGC- 16
                                                                 ** * * **   *   

consensus_250#0      TCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCA 180
consensus_250#1      ----TGTTCTTTTAGCTCGCATTTTTTAGTTCAAATA-----CAGAAAAAACA--TGTGA 65
                         ***  *   ** ** *      **  ** ****     ** **    **    * *

consensus_250#0      AATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGC 240
consensus_250#1      AATAATACAA--ATCT---TCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGC 120
                     ***  * *    ****   *   *  **  ************************** ***

consensus_250#0      CGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCC------GTCCATC 294
consensus_250#1      CGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACC 180
                     ***********************************************      ***** *

consensus_250#0      AATGCAGGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTAC 354
consensus_250#1      AATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTAC 240
                     **************************** *******************************

consensus_250#0      CAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCC 414
consensus_250#1      CAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCC 300
                     ************************************************************

consensus_250#0      CAGCCATCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAG 474
consensus_250#1      CAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAG 360
                     ************************ ***********************************

consensus_250#0      AAAGCTTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTG 534
consensus_250#1      AAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTG 420
                     ***** ******************************************************

consensus_250#0      TAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAA--------------GCGGT 580
consensus_250#1      TAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGT 480
                     *****************************************              *****

consensus_250#0      GAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTA 640
consensus_250#1      GAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTA 540
                     ************************************************************

consensus_250#0      ACAACAGCGCGTAGCTGTAAGTTTATACCGGTTTTAA-TTATTTTCTAATTTATGATTCC 699
consensus_250#1      ACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCC 600
                     ***** ******************************* **********************

consensus_250#0      ATACGTGGNCACGTTAGGAAGATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGG 759
consensus_250#1      ATACGTGGCCACGTTAGGAAGATTT-GCCCAGGAAGGAACAAACTGCTT----------- 648
                     ******** **************** ********* *************           

consensus_250#0      GCAAAAACTGGNGCGTTTTAGCTCATCTTGAGAATAG 796
consensus_250#1      -------------------------------------