cluster # 2513

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Anopheles gambiae
cluster # 2513 cluster # 2513 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2513#0 length = 664 sequences # 1

consensus_2513#1 length = 541 sequences # 1

consensusID : consensus_2513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGCCAATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGCGGAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACACACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTNACCANCCGCCACCTCTAACCACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTTACCCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACCCAAACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCACCACTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGTNGCGCC]

[+] EMBL AL930959             [AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGCCAATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGCGGAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACACACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTNACCANCCGCCACCTCTAACCACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTTACCCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACCCAAACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCACCACTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGTNGCGCC]




>consensus_2513#0
AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGG
AGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGAT
CAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTAC
CTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGCC
AATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGCG
GAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACAC
ACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTNACCANCCGCCACCTCTAAC
CACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTTAC
CCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACCCA
AACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCACCA
CTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGTNG
CGCC

consensusID : consensus_2513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [ATCGCCCCGAGGNTGGACGCACGTGTACAGACAAAGCCGGGGGTCGCCCACAACAATCTATGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCGTGTGTTTAAGTAAACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTTTGGTGTCTGATTATAACATAGTGATTAGTGGTATTATGACGTTGAGTGCGGTTTAAAATGAATAGGAGCAGCAGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATTTATTACACGATTACAAAACTACCATTATAATATATACATATACACACATTATATACACTCACAGGCAGACTGTATGAAGCATTGCTACATTCTGCATGGAGTGACGTAATAAGGT]

[+] EMBL AL931285             [ATCGCCCCGAGGNTGGACGCACGTGTACAGACAAAGCCGGGGGTCGCCCACAACAATCTATGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCGTGTGTTTAAGTAAACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTTTGGTGTCTGATTATAACATAGTGATTAGTGGTATTATGACGTTGAGTGCGGTTTAAAATGAATAGGAGCAGCAGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATTTATTACACGATTACAAAACTACCATTATAATATATACATATACACACATTATATACACTCACAGGCAGACTGTATGAAGCATTGCTACATTCTGCATGGAGTGACGTAATAAGGT]




>consensus_2513#1
ATCGCCCCGAGGNTGGACGCACGTGTACAGACAAAGCCGGGGGTCGCCCACAACAATCTA
TGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCGT
GTGTTTAAGTAAACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTTTGGTG
TCTGATTATAACATAGTGATTAGTGGTATTATGACGTTGAGTGCGGTTTAAAATGAATAG
GAGCAGCAGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCG
CCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGT
GGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCT
CGCATTTATTACACGATTACAAAACTACCATTATAATATATACATATACACACATTATAT
ACACTCACAGGCAGACTGTATGAAGCATTGCTACATTCTGCATGGAGTGACGTAATAAGG
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2513#0      AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGG 60
consensus_2513#1      -----------------------------------------------ATCGCCCCGAGGN 13
                                                                     **      **** 

consensus_2513#0      AGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGAT 120
consensus_2513#1      TGGACGCAC---GTGTACAGACAAAGCC----------GGGGGTCGCCCACAACAATC-T 59
                       ****  **   *****  * ***  *           *  *  * * * **  **   *

consensus_2513#0      CAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTAT-TGTA 179
consensus_2513#1      ATGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCG 119
                        **    **   * ** * *** *          ** * **  * **  * * * **  

consensus_2513#0      CCTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGC 239
consensus_2513#1      TGTGTTTAAGTAA----ACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTT 175
                        * * *******    **      ** * ****   *     * * *    ** * *  

consensus_2513#0      CAATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGC 299
consensus_2513#1      TGGTGTCTGAT-TATAACATAGTGATTAGTGGTATTATGACGTTGAGT--GCGGTTTAAA 232
                         **     * * *   * **   * ****      ***   ****   ****  *   

consensus_2513#0      GGAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACA 359
consensus_2513#1      ATGAATAGGAGCAGC----AGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATA 288
                         **  ***    *    *    ** *  ****   *    *  **  *   * *** *

consensus_2513#0      CACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTN-ACCANCCGCCACCTCTA 418
consensus_2513#1      CCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAG 348
                      *       * *   *  *      ** *   *    ***    *  * *   ** * *  

consensus_2513#0      ACCACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTT 478
consensus_2513#1      ATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTT--TCT 406
                      * *  **         *   * * *   *         * ***  **     ***    *

consensus_2513#0      ACCCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACC 538
consensus_2513#1      AAGTAA--CGAAACCTCGCAT-TTATTACACGATTACAA-AACTACCATTATAATATATA 462
                      *   **  * ***** *  *  *** *  **  * **   *** **     *   * *  

consensus_2513#0      CAAACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCAC 598
consensus_2513#1      CATATA-CACACATTATATACACTCACAGGCAGACTGTATGAA-----GCATTGCTACAT 516
                      ** *   * ****      ** * * * **    *    **        **  **  ** 

consensus_2513#0      CACTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGT 658
consensus_2513#1      TCTGCATGGAGTGACGTAATAAGGT----------------------------------- 541
                            *   * * **   ***                                      

consensus_2513#0      NGCGCC 664
consensus_2513#1      ------