cluster # 2515

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Anopheles gambiae
cluster # 2515 cluster # 2515 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2515#0 length = 776 sequences # 1

consensus_2515#1 length = 507 sequences # 1

consensusID : consensus_2515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence

                              [CCGGTGAGGTACTAGCAGACGGCTCCTTACCGAATGCGCCCTCCACATCGTCAAACTCACCACCCGGGGCTGGCCGTCGCCTTTCCGCCGTTCGGCCGCTTAACCAGGAGCAGCTTGTCCCCTTGGCGGTGGCCAACTCGGAGATCATCAACATCATTATGGGCGACATTGTGTCCGTGATCAACTCGGTCGATTACATCAACGATTCGGTGCTGTTTAAGATCGCGGGCGTCATCTGCAACCATGCGACCGGTGGAGCGTCGATGGATTACGGCCAACCCAGTGGCGACGCCGGCCAACAGCATCACCATCATCATCACCATCAGCACCATTACCATCATCACCATGCGCGGACGGGGCAGTCGCCAGCCGCATCGTTGCTGGCCGCTGCCTCATTCCTCTCCGCCCAAGGCGATGATCCACAAGCGGGGTGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGGGGACGTGTTCAGTCGGGAGGACTTTTTTGCGCCACCTGGAAAGCTGGAATCGCACGGACAAGGACGAGTTTATCTCCAATTTTGGAGAACTTTCTGAACAACATTCTGGCTCCGATCGTCCGCCGTGGAAGGGAAAAGAAGGGGGACCAAGGAGGAGGACCCCAATTCCCCGGGCGGGGCCACTGGTCGGGGGGGAAGGGCAGCAAAAGGGGGGCCTTACCGTGAAACAGGGGACCGCCCTTGACGGGGGCCAATCGGTTAACCAAGGGAAGGCACCCGCGGGGCAAATTTCAGCG]

[+] EMBL BM657717             [CCGGTGAGGTACTAGCAGACGGCTCCTTACCGAATGCGCCCTCCACATCGTCAAACTCACCACCCGGGGCTGGCCGTCGCCTTTCCGCCGTTCGGCCGCTTAACCAGGAGCAGCTTGTCCCCTTGGCGGTGGCCAACTCGGAGATCATCAACATCATTATGGGCGACATTGTGTCCGTGATCAACTCGGTCGATTACATCAACGATTCGGTGCTGTTTAAGATCGCGGGCGTCATCTGCAACCATGCGACCGGTGGAGCGTCGATGGATTACGGCCAACCCAGTGGCGACGCCGGCCAACAGCATCACCATCATCATCACCATCAGCACCATTACCATCATCACCATGCGCGGACGGGGCAGTCGCCAGCCGCATCGTTGCTGGCCGCTGCCTCATTCCTCTCCGCCCAAGGCGATGATCCACAAGCGGGGTGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGGGGACGTGTTCAGTCGGGAGGACTTTTTTGCGCCACCTGGAAAGCTGGAATCGCACGGACAAGGACGAGTTTATCTCCAATTTTGGAGAACTTTCTGAACAACATTCTGGCTCCGATCGTCCGCCGTGGAAGGGAAAAGAAGGGGGACCAAGGAGGAGGACCCCAATTCCCCGGGCGGGGCCACTGGTCGGGGGGGAAGGGCAGCAAAAGGGGGGCCTTACCGTGAAACAGGGGACCGCCCTTGACGGGGGCCAATCGGTTAACCAAGGGAAGGCACCCGCGGGGCAAATTTCAGCG]




>consensus_2515#0
CCGGTGAGGTACTAGCAGACGGCTCCTTACCGAATGCGCCCTCCACATCGTCAAACTCAC
CACCCGGGGCTGGCCGTCGCCTTTCCGCCGTTCGGCCGCTTAACCAGGAGCAGCTTGTCC
CCTTGGCGGTGGCCAACTCGGAGATCATCAACATCATTATGGGCGACATTGTGTCCGTGA
TCAACTCGGTCGATTACATCAACGATTCGGTGCTGTTTAAGATCGCGGGCGTCATCTGCA
ACCATGCGACCGGTGGAGCGTCGATGGATTACGGCCAACCCAGTGGCGACGCCGGCCAAC
AGCATCACCATCATCATCACCATCAGCACCATTACCATCATCACCATGCGCGGACGGGGC
AGTCGCCAGCCGCATCGTTGCTGGCCGCTGCCTCATTCCTCTCCGCCCAAGGCGATGATC
CACAAGCGGGGTGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGG
GGACGTGTTCAGTCGGGAGGACTTTTTTGCGCCACCTGGAAAGCTGGAATCGCACGGACA
AGGACGAGTTTATCTCCAATTTTGGAGAACTTTCTGAACAACATTCTGGCTCCGATCGTC
CGCCGTGGAAGGGAAAAGAAGGGGGACCAAGGAGGAGGACCCCAATTCCCCGGGCGGGGC
CACTGGTCGGGGGGGAAGGGCAGCAAAAGGGGGGCCTTACCGTGAAACAGGGGACCGCCC
TTGACGGGGGCCAATCGGTTAACCAAGGGAAGGCACCCGCGGGGCAAATTTCAGCG

consensusID : consensus_2515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [AGAATGCCGAGGTATAGCACATTACATCATCACATGCGCGGACGGGACAGTCGCGGCGATNTTGCTGGCGGTGCTCATTTCTCTCCGGCCAAAGGGATGATNCACAAGCGGGTGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGGGACGTGTTCAGTCCGGGAGGACTTTTTTGNGCCACCTGGAAAGCTGGAATCTGCACGGACAAGGACGAGTTTATCTTCCAATTTTGGGAGGAACTTTCTTGAACAACATTTCTTGGTCCCGATCTGTCCGCCGTGGAGGGTGAGGAGGGGGACGACTGAAGTGAGNGACGCAACTCACGGGCGTTGTCCACTTGTCGGGTGTGNGAGCGTCCACGCCACACAGGTTGCGGGCCTTACGGTTGTGAACGGGTAACCGCCCTTGTACCGGGTGCGTCCGGGTTAACGCAACGGAAGCGGCACCGCCGGGGCCAAATCCCAGACGGTGCCAANGTGCAATTGGTNNGCG]

[+] EMBL AL930990             [AGAATGCCGAGGTATAGCACATTACATCATCACATGCGCGGACGGGACAGTCGCGGCGATNTTGCTGGCGGTGCTCATTTCTCTCCGGCCAAAGGGATGATNCACAAGCGGGTGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGGGACGTGTTCAGTCCGGGAGGACTTTTTTGNGCCACCTGGAAAGCTGGAATCTGCACGGACAAGGACGAGTTTATCTTCCAATTTTGGGAGGAACTTTCTTGAACAACATTTCTTGGTCCCGATCTGTCCGCCGTGGAGGGTGAGGAGGGGGACGACTGAAGTGAGNGACGCAACTCACGGGCGTTGTCCACTTGTCGGGTGTGNGAGCGTCCACGCCACACAGGTTGCGGGCCTTACGGTTGTGAACGGGTAACCGCCCTTGTACCGGGTGCGTCCGGGTTAACGCAACGGAAGCGGCACCGCCGGGGCCAAATCCCAGACGGTGCCAANGTGCAATTGGTNNGCG]




>consensus_2515#1
AGAATGCCGAGGTATAGCACATTACATCATCACATGCGCGGACGGGACAGTCGCGGCGAT
NTTGCTGGCGGTGCTCATTTCTCTCCGGCCAAAGGGATGATNCACAAGCGGGTGGTGGTG
ACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGGGACGTGTTCAGTCCGGGAG
GACTTTTTTGNGCCACCTGGAAAGCTGGAATCTGCACGGACAAGGACGAGTTTATCTTCC
AATTTTGGGAGGAACTTTCTTGAACAACATTTCTTGGTCCCGATCTGTCCGCCGTGGAGG
GTGAGGAGGGGGACGACTGAAGTGAGNGACGCAACTCACGGGCGTTGTCCACTTGTCGGG
TGTGNGAGCGTCCACGCCACACAGGTTGCGGGCCTTACGGTTGTGAACGGGTAACCGCCC
TTGTACCGGGTGCGTCCGGGTTAACGCAACGGAAGCGGCACCGCCGGGGCCAAATCCCAG
ACGGTGCCAANGTGCAATTGGTNNGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2515#0      CCGGTGAGGTACTAGCAGACGGCTCCTTACCGAATGCGCCCTCCACATCGTCAAACTCAC 60
consensus_2515#1      ------------------------------------------------------------
                                                                                  

consensus_2515#0      CACCCGGGGCTGGCCGTCGCCTTTCCGCCGTTCGGCCGCTTAACCAGGAGCAGCTTGTCC 120
consensus_2515#1      ------------------------------------------------------------
                                                                                  

consensus_2515#0      CCTTGGCGGTGGCCAACTCGGAGATCATCAACATCATTATGGGCGACATTGTGTCCGTGA 180
consensus_2515#1      ------------------------------------------------------------
                                                                                  

consensus_2515#0      TCAACTCGGTCGATTACATCAACGATTCGGTGCTGTTTAAGATCGCGGGCGTCATCTGCA 240
consensus_2515#1      ------------------------------------------------------------
                                                                                  

consensus_2515#0      ACCATGCGACCGGTGGAGCGTCGATGGATTACGGCCAACCCAGTGGCGACGCCGGCCAAC 300
consensus_2515#1      ------------------------------------------------------------
                                                                                  

consensus_2515#0      AGCATCACCATCATCATCACCATCAGCACCATTACCATCATCACCATGCGCGGACGGGGC 360
consensus_2515#1      ---------AGAATGCCGAGGTATAGCAC-ATTAC-ATCATCAC-ATGCGCGGACGGGAC 48
                               *  **    *     ***** ***** ******** ************* *

consensus_2515#0      AGTCGCCAGCCGCATCGTTGCTGGCCGCTGCCTCATTCCTCTCCGCCCAAGGCGATGATC 420
consensus_2515#1      AGTCG----CGGCGATNTTGCTGGCGGTG--CTCATTTCTCTCCGGCCAAAGGGATGATN 102
                      *****    * **    ******** *    ****** ******* **** * ****** 

consensus_2515#0      CACAAGCGGGGTGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGG 480
consensus_2515#1      CACAAGCGGG-TGGTGGTGACATGAGCAGCGGTGCCGCCGGTGCTGGCAGTGCCGGTGGG 161
                      ********** *************************************************

consensus_2515#0      GGACGTGTTCAGTC-GGGAGGACTTTTTTGCGCCACCTGGAAAGCTGGAATC-GCACGGA 538
consensus_2515#1      G-ACGTGTTCAGTCCGGGAGGACTTTTTTGNGCCACCTGGAAAGCTGGAATCTGCACGGA 220
                      * ************ *************** ********************* *******

consensus_2515#0      CAAGGACGAGTTTATCT-CCAATTTTGGA--GAACTTTCT-GAACAACATTC--TGGCTC 592
consensus_2515#1      CAAGGACGAGTTTATCTTCCAATTTTGGGAGGAACTTTCTTGAACAACATTTCTTGGTCC 280
                      ***************** **********   ********* **********   ***  *

consensus_2515#0      CGATC-GTCCGCCGTGGAAGG-GAAAAGAAGGGGGACCAAGGAGGAGGACCCCAATTCCC 650
consensus_2515#1      CGATCTGTCCGCCGTGGAGGGTGAGGAGGGGGACGACTGAAGTGAGNGACGC-AACTCAC 339
                      ***** ************ ** **  **  **  ***  * * *   *** * ** ** *

consensus_2515#0      CGGGCGGGGCCACTGGTCGGGGGGGAAGG-------GCAGCAAAAG--GGGGGCCTTACC 701
consensus_2515#1      GGGCGTTGTCCACTTGTCGGGTGTGNGAGCGTCCACGCCACACAGGTTGCGGGCCTTACG 399
                       **    * ***** ****** * *   *       **  ** * *  * ********* 

consensus_2515#0      GTGA--AACAGGGGACCGCCCTTGA--CGGGGGCCAATCGGTTAAC-CAAGGGAAG--GC 754
consensus_2515#1      GTTGTGAACGGGTAACCGCCCTTGTACCGGGTGCGTCCGGGTTAACGCAACGGAAGCGGC 459
                      **    *** **  **********   **** **     ******* *** *****  **

consensus_2515#0      ACCCGCGGGGC-AAATTTCAG-CG------------------------ 776
consensus_2515#1      ACCGCCGGGGCCAAATCCCAGACGGTGCCAANGTGCAATTGGTNNGCG 507
                      ***  ****** ****  *** **