cluster # 2517

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Anopheles gambiae
cluster # 2517 cluster # 2517 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2517#0 length = 683 sequences # 1

consensus_2517#1 length = 97 sequences # 1

consensusID : consensus_2517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGTGCGAGCTGTGCAAGAAGGAGTTCCTCTACCCGTGCAATCTCAACCAGCACAAGCAGCTGCACCATTCGAAGGAGAAGCCGCACGAGTGCCGCATCTGCCACTATCGCTTCGAGTACGTCGGCCACCTGCAGCGGCACATCCGGCAGCAGCACGAAAAGATGGCGGAGGAGCTGCTGGCGCCGGCGGAACCGCAAACGTTCGATTGCAACTTTTGCGGCGAATCGTTCGACTCGAAGCCTCTGCTAACGGCACACGTGCACACGTTGCACCGAGGCGAGAAGCCGTTCCAGTGTGACAAGTGTCCGGCTACGTTTAGCTATAAGAAATCTTACGAAACTCACCGAGAGGAACATTACTTGAAAGCCAGTAATGGAGCCTTCAAGTGCAGCTTCTGCAAGAAAACTTTCAACAGCGCACAAAAAGTAGACAACCATGTTTGCATTCAATAGTGAAACCGGAATATAGAACACCACTCTACAAAGTAATATAATATATATACTGAAGCAATGCTAACAATTTACGCTAAAAACAAACAAACAAAAACCGCCGATCGTTTGGTGGGAGATAGCGGCAGAACGGAGCGGTGGTGGCTAAAACAATACAAATTATAGCAGCTATAATGTATCTTTTTACAACACACACATACTCAACACATATGCGCCGAAAGCCTCGTGTAAG]

[+] EMBL BM594692             [CCGGTGCGAGCTGTGCAAGAAGGAGTTCCTCTACCCGTGCAATCTCAACCAGCACAAGCAGCTGCACCATTCGAAGGAGAAGCCGCACGAGTGCCGCATCTGCCACTATCGCTTCGAGTACGTCGGCCACCTGCAGCGGCACATCCGGCAGCAGCACGAAAAGATGGCGGAGGAGCTGCTGGCGCCGGCGGAACCGCAAACGTTCGATTGCAACTTTTGCGGCGAATCGTTCGACTCGAAGCCTCTGCTAACGGCACACGTGCACACGTTGCACCGAGGCGAGAAGCCGTTCCAGTGTGACAAGTGTCCGGCTACGTTTAGCTATAAGAAATCTTACGAAACTCACCGAGAGGAACATTACTTGAAAGCCAGTAATGGAGCCTTCAAGTGCAGCTTCTGCAAGAAAACTTTCAACAGCGCACAAAAAGTAGACAACCATGTTTGCATTCAATAGTGAAACCGGAATATAGAACACCACTCTACAAAGTAATATAATATATATACTGAAGCAATGCTAACAATTTACGCTAAAAACAAACAAACAAAAACCGCCGATCGTTTGGTGGGAGATAGCGGCAGAACGGAGCGGTGGTGGCTAAAACAATACAAATTATAGCAGCTATAATGTATCTTTTTACAACACACACATACTCAACACATATGCGCCGAAAGCCTCGTGTAAG]




>consensus_2517#0
CCGGTGCGAGCTGTGCAAGAAGGAGTTCCTCTACCCGTGCAATCTCAACCAGCACAAGCA
GCTGCACCATTCGAAGGAGAAGCCGCACGAGTGCCGCATCTGCCACTATCGCTTCGAGTA
CGTCGGCCACCTGCAGCGGCACATCCGGCAGCAGCACGAAAAGATGGCGGAGGAGCTGCT
GGCGCCGGCGGAACCGCAAACGTTCGATTGCAACTTTTGCGGCGAATCGTTCGACTCGAA
GCCTCTGCTAACGGCACACGTGCACACGTTGCACCGAGGCGAGAAGCCGTTCCAGTGTGA
CAAGTGTCCGGCTACGTTTAGCTATAAGAAATCTTACGAAACTCACCGAGAGGAACATTA
CTTGAAAGCCAGTAATGGAGCCTTCAAGTGCAGCTTCTGCAAGAAAACTTTCAACAGCGC
ACAAAAAGTAGACAACCATGTTTGCATTCAATAGTGAAACCGGAATATAGAACACCACTC
TACAAAGTAATATAATATATATACTGAAGCAATGCTAACAATTTACGCTAAAAACAAACA
AACAAAAACCGCCGATCGTTTGGTGGGAGATAGCGGCAGAACGGAGCGGTGGTGGCTAAA
ACAATACAAATTATAGCAGCTATAATGTATCTTTTTACAACACACACATACTCAACACAT
ATGCGCCGAAAGCCTCGTGTAAG

consensusID : consensus_2517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 97
fasta sequence

                              [GCTAAAAAAAAAACAAACAAAAACCAGAACGTTTGTGTGGAGGATAGCGGCAGAACGAGCGGTGGTGGCTAAAACAATACAAATTATAGCAGCTATA]

[+] EMBL BX612177             [GCTAAAAAAAAAACAAACAAAAACCAGAACGTTTGTGTGGAGGATAGCGGCAGAACGAGCGGTGGTGGCTAAAACAATACAAATTATAGCAGCTATA]




>consensus_2517#1
GCTAAAAAAAAAACAAACAAAAACCAGAACGTTTGTGTGGAGGATAGCGGCAGAACGAGC
GGTGGTGGCTAAAACAATACAAATTATAGCAGCTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2517#0      CCGGTGCGAGCTGTGCAAGAAGGAGTTCCTCTACCCGTGCAATCTCAACCAGCACAAGCA 60
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      GCTGCACCATTCGAAGGAGAAGCCGCACGAGTGCCGCATCTGCCACTATCGCTTCGAGTA 120
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      CGTCGGCCACCTGCAGCGGCACATCCGGCAGCAGCACGAAAAGATGGCGGAGGAGCTGCT 180
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      GGCGCCGGCGGAACCGCAAACGTTCGATTGCAACTTTTGCGGCGAATCGTTCGACTCGAA 240
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      GCCTCTGCTAACGGCACACGTGCACACGTTGCACCGAGGCGAGAAGCCGTTCCAGTGTGA 300
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      CAAGTGTCCGGCTACGTTTAGCTATAAGAAATCTTACGAAACTCACCGAGAGGAACATTA 360
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      CTTGAAAGCCAGTAATGGAGCCTTCAAGTGCAGCTTCTGCAAGAAAACTTTCAACAGCGC 420
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      ACAAAAAGTAGACAACCATGTTTGCATTCAATAGTGAAACCGGAATATAGAACACCACTC 480
consensus_2517#1      ------------------------------------------------------------
                                                                                  

consensus_2517#0      TACAAAGTAATATAATATATATACTGAAGCAATGCTAACAATTTACGCTAAAAACAAA-C 539
consensus_2517#1      ----------------------------------------------GCTAAAAAAAAAAC 14
                                                                    ******** *** *

consensus_2517#0      AAACAAAAACCGCCGATCGTTTG-GTGGGAGATAGCGGCAGAACGGAGCGGTGGTGGCTA 598
consensus_2517#1      AAACAAAAACCA--GAACGTTTGTGTGGAGGATAGCGGCAGAACG-AGCGGTGGTGGCTA 71
                      ***********   ** ****** ****  *************** **************

consensus_2517#0      AAACAATACAAATTATAGCAGCTATAATGTATCTTTTTACAACACACACATACTCAACAC 658
consensus_2517#1      AAACAATACAAATTATAGCAGCTATA---------------------------------- 97
                      **************************                                  

consensus_2517#0      ATATGCGCCGAAAGCCTCGTGTAAG 683
consensus_2517#1      -------------------------