cluster # 2529

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Anopheles gambiae
cluster # 2529 cluster # 2529 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2529#0 length = 486 sequences # 1

consensus_2529#1 length = 223 sequences # 1

consensusID : consensus_2529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CTCGTCGCGATTGCGATTGCTGGGTCACTAACCCTGTGCTGTTTGTTTGATTTGATCGTGTTGAAAAGCGCAGAGTGTGATTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCGTATCGGTCCAAAGCCCTTTTTTGGTTGATAGCCTCTTTTTTGTTGATAGAATCTCACTTCTTCATGTGCAGTGGTGTTATCATCTGCCGTTGGTGTATGTGTGTGCGTGTGTTCATGTTTCTGTCTGTACAGCAGCACTATTATGAACATTGAAGCAGAACGTACCGCGACGGAGTATCTGGTCGACCAGGGTGTGCCGACGGCCAATGCCAACAAATCGCTGCTCAGCTTTCTCGCAATCAACGCTCTCGAGCTGAGTGCACCCGCCAGTCCCGTCCTGCTAGAATGTAACACTCCAACCGTTCCTCCCGGCTGGCTGCAGCTGTCCGGCCATCCAAAAAGCCATCGCCCCTCTAGCCAATGGGATCGT]

[+] EMBL CNS08M3N             [CTCGTCGCGATTGCGATTGCTGGGTCACTAACCCTGTGCTGTTTGTTTGATTTGATCGTGTTGAAAAGCGCAGAGTGTGATTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCGTATCGGTCCAAAGCCCTTTTTTGGTTGATAGCCTCTTTTTTGTTGATAGAATCTCACTTCTTCATGTGCAGTGGTGTTATCATCTGCCGTTGGTGTATGTGTGTGCGTGTGTTCATGTTTCTGTCTGTACAGCAGCACTATTATGAACATTGAAGCAGAACGTACCGCGACGGAGTATCTGGTCGACCAGGGTGTGCCGACGGCCAATGCCAACAAATCGCTGCTCAGCTTTCTCGCAATCAACGCTCTCGAGCTGAGTGCACCCGCCAGTCCCGTCCTGCTAGAATGTAACACTCCAACCGTTCCTCCCGGCTGGCTGCAGCTGTCCGGCCATCCAAAAAGCCATCGCCCCTCTAGCCAATGGGATCGT]




>consensus_2529#0
CTCGTCGCGATTGCGATTGCTGGGTCACTAACCCTGTGCTGTTTGTTTGATTTGATCGTG
TTGAAAAGCGCAGAGTGTGATTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCGTATC
GGTCCAAAGCCCTTTTTTGGTTGATAGCCTCTTTTTTGTTGATAGAATCTCACTTCTTCA
TGTGCAGTGGTGTTATCATCTGCCGTTGGTGTATGTGTGTGCGTGTGTTCATGTTTCTGT
CTGTACAGCAGCACTATTATGAACATTGAAGCAGAACGTACCGCGACGGAGTATCTGGTC
GACCAGGGTGTGCCGACGGCCAATGCCAACAAATCGCTGCTCAGCTTTCTCGCAATCAAC
GCTCTCGAGCTGAGTGCACCCGCCAGTCCCGTCCTGCTAGAATGTAACACTCCAACCGTT
CCTCCCGGCTGGCTGCAGCTGTCCGGCCATCCAAAAAGCCATCGCCCCTCTAGCCAATGG
GATCGT

consensusID : consensus_2529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [CCGCGAGATACGGACGCCACACGGCGCTAGGGCACCTTTCCTCGTCGCGATTGCGATTGCTGGGTCACTAACCCTGTGCTGTTTGTTCGATTTGATCGTGTTGAAAAGGCAGAGTGTGATTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCATATCGGTCCAAAGCCCTTTTTTGGTTGATAGAATCTCACATTTCTTCATGTGCAGTGGTGTTATCATC]

[+] EMBL BM594370             [CCGCGAGATACGGACGCCACACGGCGCTAGGGCACCTTTCCTCGTCGCGATTGCGATTGCTGGGTCACTAACCCTGTGCTGTTTGTTCGATTTGATCGTGTTGAAAAGGCAGAGTGTGATTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCATATCGGTCCAAAGCCCTTTTTTGGTTGATAGAATCTCACATTTCTTCATGTGCAGTGGTGTTATCATC]




>consensus_2529#1
CCGCGAGATACGGACGCCACACGGCGCTAGGGCACCTTTCCTCGTCGCGATTGCGATTGC
TGGGTCACTAACCCTGTGCTGTTTGTTCGATTTGATCGTGTTGAAAAGGCAGAGTGTGAT
TTCTCAATATTCCAGCTCAAAAATAGCAACTTGCATATCGGTCCAAAGCCCTTTTTTGGT
TGATAGAATCTCACATTTCTTCATGTGCAGTGGTGTTATCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2529#0      ----------------------------------------CTCGTCGCGATTGCGATTGC 20
consensus_2529#1      CCGCGAGATACGGACGCCACACGGCGCTAGGGCACCTTTCCTCGTCGCGATTGCGATTGC 60
                                                              ********************

consensus_2529#0      TGGGTCACTAACCCTGTGCTGTTTGTTTGATTTGATCGTGTTGAAAAGCGCAGAGTGTGA 80
consensus_2529#1      TGGGTCACTAACCCTGTGCTGTTTGTTCGATTTGATCGTGTTGAAAAG-GCAGAGTGTGA 119
                      *************************** ******************** ***********

consensus_2529#0      TTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCGTATCGGTCCAAAGCCCTTTTTTGG 140
consensus_2529#1      TTTCTCAATATTCCAGCTCAAAAATAGCAACTTGCATATCGGTCCAAAGCCCTTTTTTGG 179
                      *********************************** ************************

consensus_2529#0      TTGATAGCCTCTTTTTTGTTGATAGAATCTCACTTCTTCATGTGCAGTGGTGTTATCATC 200
consensus_2529#1      TTGATAGAATCT----------------CACATTTCTTCATGTGCAGTGGTGTTATCATC 223
                      *******  ***                * ** ***************************

consensus_2529#0      TGCCGTTGGTGTATGTGTGTGCGTGTGTTCATGTTTCTGTCTGTACAGCAGCACTATTAT 260
consensus_2529#1      ------------------------------------------------------------
                                                                                  

consensus_2529#0      GAACATTGAAGCAGAACGTACCGCGACGGAGTATCTGGTCGACCAGGGTGTGCCGACGGC 320
consensus_2529#1      ------------------------------------------------------------
                                                                                  

consensus_2529#0      CAATGCCAACAAATCGCTGCTCAGCTTTCTCGCAATCAACGCTCTCGAGCTGAGTGCACC 380
consensus_2529#1      ------------------------------------------------------------
                                                                                  

consensus_2529#0      CGCCAGTCCCGTCCTGCTAGAATGTAACACTCCAACCGTTCCTCCCGGCTGGCTGCAGCT 440
consensus_2529#1      ------------------------------------------------------------
                                                                                  

consensus_2529#0      GTCCGGCCATCCAAAAAGCCATCGCCCCTCTAGCCAATGGGATCGT 486
consensus_2529#1      ----------------------------------------------