cluster # 2536

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Anopheles gambiae
cluster # 2536 cluster # 2536 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2536#0 length = 721 sequences # 1

consensus_2536#1 length = 642 sequences # 1

consensusID : consensus_2536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATCTTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTTGGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAGTAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGCAAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNATATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTTAGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAATTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTACTAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAAN]

[+] EMBL AL931239             [GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATCTTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTTGGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAGTAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGCAAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNATATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTTAGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAATTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTACTAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAAN]




>consensus_2536#0
GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATC
TTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTT
GGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAG
TAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGT
CTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACA
CTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGC
CGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGC
AAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNAT
ATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTT
AGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAA
TTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTAC
TAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAA
N

consensusID : consensus_2536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAAGGTCGAACGATGGGAGGCGGCAAACGTAGTGAGTGCTGTTTTAGTGATAAGCGATACTTTCTGTTTATATGTTTTATATCATATTCTTTTCTTTTTTTGTACACTGACGAGATAACTAAGATCGTACGTATTAGGACGGTAATTTTTAGTTAATTTTGTGGCTAGTTTTTGTTTGAACAAAGGCAGAATTTTGTTCGCTCACGTTTCGAAGAACGCAAGTTCACACTAAGGTACTACTACTACTAAACGACGCACACCTCCACATTACGCACCAGCGACAGAAAACCCCCGTAAGAAATCGAGCTAGAAAGCAACGCGATTATCAACTCGTCCCGATCCCGTCGATTCGCGTATGATAACGTTAGCTCTAGAGGAAGGTGTGTCAGAAATGCACCTTTTTACAGTCACTTTTTGGCAGTTTAGGGAAAGG]

[+] EMBL BM643530             [CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCGGCCGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAAGGTCGAACGATGGGAGGCGGCAAACGTAGTGAGTGCTGTTTTAGTGATAAGCGATACTTTCTGTTTATATGTTTTATATCATATTCTTTTCTTTTTTTGTACACTGACGAGATAACTAAGATCGTACGTATTAGGACGGTAATTTTTAGTTAATTTTGTGGCTAGTTTTTGTTTGAACAAAGGCAGAATTTTGTTCGCTCACGTTTCGAAGAACGCAAGTTCACACTAAGGTACTACTACTACTAAACGACGCACACCTCCACATTACGCACCAGCGACAGAAAACCCCCGTAAGAAATCGAGCTAGAAAGCAACGCGATTATCAACTCGTCCCGATCCCGTCGATTCGCGTATGATAACGTTAGCTCTAGAGGAAGGTGTGTCAGAAATGCACCTTTTTACAGTCACTTTTTGGCAGTTTAGGGAAAGG]




>consensus_2536#1
CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGTCTTC
GCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACACTAA
ACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCGGCCGGCA
GACTGACTCTGGCTGGCTTTAAATGCTATGAAGGTCGAACGATGGGAGGCGGCAAACGTA
GTGAGTGCTGTTTTAGTGATAAGCGATACTTTCTGTTTATATGTTTTATATCATATTCTT
TTCTTTTTTTGTACACTGACGAGATAACTAAGATCGTACGTATTAGGACGGTAATTTTTA
GTTAATTTTGTGGCTAGTTTTTGTTTGAACAAAGGCAGAATTTTGTTCGCTCACGTTTCG
AAGAACGCAAGTTCACACTAAGGTACTACTACTACTAAACGACGCACACCTCCACATTAC
GCACCAGCGACAGAAAACCCCCGTAAGAAATCGAGCTAGAAAGCAACGCGATTATCAACT
CGTCCCGATCCCGTCGATTCGCGTATGATAACGTTAGCTCTAGAGGAAGGTGTGTCAGAA
ATGCACCTTTTTACAGTCACTTTTTGGCAGTTTAGGGAAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2536#0      GAATCCCCGAGGTCCAATCCAACCCTGGGCCGAGCACAGTAGACAAAATAATTGGAAATC 60
consensus_2536#1      ------------------------------------------------------------
                                                                                  

consensus_2536#0      TTAAGCAAAGCAATCCGCTGGAGAGAATGAGAGAGCGAGAGCGTGCGGAATGGTCCATTT 120
consensus_2536#1      ------------------------------------------------------------
                                                                                  

consensus_2536#0      GGGTAAAAAGTTATGTCAACATACAGCAGCAGGCAACTTTAATGACTTTAAGAGCAAAAG 180
consensus_2536#1      ------------------------------------------------------------
                                                                                  

consensus_2536#0      TAGGCGCCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGT 240
consensus_2536#1      ----CCGCATGAGCGTAATGTGACTGCGACTTCGAGACGACTTCCGTCCGAATTCGTCGT 56
                          *  *****************************************************

consensus_2536#0      CTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACA 300
consensus_2536#1      CTTCGCCGCTTGTATGCCAATGGACAACCGCACGCATACACACACAGACATACAAACACA 116
                      ************************************************************

consensus_2536#0      CTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACCTGGC 360
consensus_2536#1      CTAAACCCAAACAAAAAGGACGTAAATTTCATGCAGAGAAGGCTTCTTCGCCGACC-GGC 175
                      ******************************************************** ***

consensus_2536#0      CGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAACGGTCGAACGATGGGAGTGCGGC 420
consensus_2536#1      CGGCAGACTGACTCTGGCTGGCTTTAAATGCTATGAA-GGTCGAACGATGGGAG-GCGGC 233
                      ************************************* **************** *****

consensus_2536#0      AAACGTAGCTGAGTGCTGTNTTAGTGATAACGCGACTACTTTCTGTCTTATATGTTTNAT 480
consensus_2536#1      AAACGTAG-TGAGTGCTGTTTTAGTGATAA-GCGA-TACTTTCTGT-TTATATGTTTTAT 289
                      ******** ********** ********** **** ********** ********** **

consensus_2536#0      ATCACTATTCTTTNCTTTCCTGTACACTGACGAGATAACTAACGCATCGCTACGCTACTT 540
consensus_2536#1      ATCATATTCTTTTCTTTTTTTGTACACTGACGAGATAACTAAG--ATCG-TACGT--ATT 344
                      ****   *  ***  ***  **********************   **** ****    **

consensus_2536#0      AGGACGGTAATCTTACGTTAACTTTTNGTGGCCTAGTAACCGTTTGAACAAAGCGTAGAA 600
consensus_2536#1      AGGACGGTAATTTTTAGTTAA--TTTTGTGGC-TAGTTTTTGTTTGAACAAAG-GCAGAA 400
                      *********** **  *****  *** ***** ****    ************ * ****

consensus_2536#0      TTCCGTNCAGCTCACGCTTTNCGAAGAACGCAAGTTCACACTAAGGGTACTTACTACTAC 660
consensus_2536#1      TTTTGTTC-GCTCACG--TTTCGAAGAACGCAAGTTCACACTAAGG-TACT-ACTACTAC 455
                      **  ** * *******  ** ************************* **** ********

consensus_2536#0      TAACACGACGCACACCTCCACATTACGCACCCAGCTGACAGAAACACCCCCGCTCAGCAA 720
consensus_2536#1      TAA-ACGACGCACACCTCCACATTACGCACC-AGC-GACAGAAA-ACCCCCG-TAAGAAA 510
                      *** *************************** *** ******** ******* * ** **

consensus_2536#0      N----------------------------------------------------------- 721
consensus_2536#1      TCGAGCTAGAAAGCAACGCGATTATCAACTCGTCCCGATCCCGTCGATTCGCGTATGATA 570
                                                                                  

consensus_2536#0      ------------------------------------------------------------
consensus_2536#1      ACGTTAGCTCTAGAGGAAGGTGTGTCAGAAATGCACCTTTTTACAGTCACTTTTTGGCAG 630
                                                                                  

consensus_2536#0      ------------
consensus_2536#1      TTTAGGGAAAGG 642