cluster # 2537

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Anopheles gambiae
cluster # 2537 cluster # 2537 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2537#0 length = 713 sequences # 1

consensus_2537#1 length = 657 sequences # 1

consensusID : consensus_2537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [CCCCGGAGGAAAAAGCACACACGCACACCGTAGCCGCAGCCGCGTGGATTCGTCGACCATCGTTCGTGCCGCAACGACACTACGCAACGGCCGCAAACGTTTGCCGTGCTCTTCCGCTGCTGTGCTGCGAAAAGTTGGTGTTGCAAGGCGCGCCGCAGCAAAGCCAAGGCTGAGAGCAAACCCACGTCGTGAACCCTTAAAAATACCCCCAAAAAAAAAGGAACAACCTCAAACCTCTGGAAGAAGGTACTCACCCCGTGCGCGCGTCTTTCGCTCAACGCGGCAGCATCCAGCCATCCGGACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAACACAGCAGCGCCCGTGTGCTTGTGCAAACCTGTGTGCCGCTGTGGCACCGCTGGGCGGCGGTGGGGTTTGGTGGTTGTATGCCCCGAGCGCAAAGGCCGGAAGGTGATGTGTGCGTTTATGGTTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACGACGGGCAGCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGCGCCACCGGCGGTAGTGTTTCGGAGTGTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAGGAAAAGGTTCTTTAAAGCCGCGTTTCGGAAACTACTGAAATTGCCTGCACGCATTCGAGCCGCGACAAGAAAAAANGTGATCCCCGTACGAGTGCCGTGTGTCTCTATGTGAA]

[+] EMBL BX623725             [CCCCGGAGGAAAAAGCACACACGCACACCGTAGCCGCAGCCGCGTGGATTCGTCGACCATCGTTCGTGCCGCAACGACACTACGCAACGGCCGCAAACGTTTGCCGTGCTCTTCCGCTGCTGTGCTGCGAAAAGTTGGTGTTGCAAGGCGCGCCGCAGCAAAGCCAAGGCTGAGAGCAAACCCACGTCGTGAACCCTTAAAAATACCCCCAAAAAAAAAGGAACAACCTCAAACCTCTGGAAGAAGGTACTCACCCCGTGCGCGCGTCTTTCGCTCAACGCGGCAGCATCCAGCCATCCGGACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAACACAGCAGCGCCCGTGTGCTTGTGCAAACCTGTGTGCCGCTGTGGCACCGCTGGGCGGCGGTGGGGTTTGGTGGTTGTATGCCCCGAGCGCAAAGGCCGGAAGGTGATGTGTGCGTTTATGGTTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACGACGGGCAGCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGCGCCACCGGCGGTAGTGTTTCGGAGTGTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAGGAAAAGGTTCTTTAAAGCCGCGTTTCGGAAACTACTGAAATTGCCTGCACGCATTCGAGCCGCGACAAGAAAAAANGTGATCCCCGTACGAGTGCCGTGTGTCTCTATGTGAA]




>consensus_2537#0
CCCCGGAGGAAAAAGCACACACGCACACCGTAGCCGCAGCCGCGTGGATTCGTCGACCAT
CGTTCGTGCCGCAACGACACTACGCAACGGCCGCAAACGTTTGCCGTGCTCTTCCGCTGC
TGTGCTGCGAAAAGTTGGTGTTGCAAGGCGCGCCGCAGCAAAGCCAAGGCTGAGAGCAAA
CCCACGTCGTGAACCCTTAAAAATACCCCCAAAAAAAAAGGAACAACCTCAAACCTCTGG
AAGAAGGTACTCACCCCGTGCGCGCGTCTTTCGCTCAACGCGGCAGCATCCAGCCATCCG
GACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAACACAGCAGCGCCCGTGTG
CTTGTGCAAACCTGTGTGCCGCTGTGGCACCGCTGGGCGGCGGTGGGGTTTGGTGGTTGT
ATGCCCCGAGCGCAAAGGCCGGAAGGTGATGTGTGCGTTTATGGTTTCGGATGTGTCGCT
GTTGGTAGTCGCTAGACGACGGGCAGCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGCG
CCACCGGCGGTAGTGTTTCGGAGTGTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAG
GAAAAGGTTCTTTAAAGCCGCGTTTCGGAAACTACTGAAATTGCCTGCACGCATTCGAGC
CGCGACAAGAAAAAANGTGATCCCCGTACGAGTGCCGTGTGTCTCTATGTGAA

consensusID : consensus_2537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGCACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCCTGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGTGCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGCAAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAAACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAGCATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAACACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCACTGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTGTGATTGTGTGCGTTATGGTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNGGCAGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG]

[+] EMBL AL931255             [AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGCACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCCTGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGTGCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGCAAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAAACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAGCATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAACACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCACTGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTGTGATTGTGTGCGTTATGGTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNGGCAGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG]




>consensus_2537#1
AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGC
ACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCC
TGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGT
GCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGC
AAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAA
ACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAG
CATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAA
CACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCAC
TGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTG
TGATTGTGTGCGTTATGGTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNGGC
AGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2537#0      --------------------------------------------CCCCGGAGGAAAAAGC 16
consensus_2537#1      AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGC 60
                                                                  ****************

consensus_2537#0      ACACACGCACACCGTAGCC-GCAGCC-GCGTG-GATTCGTCGACCATCGTTCGTGCCGC- 72
consensus_2537#1      ACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCC 120
                      ******************* ****** ***** **************** *  **  ** 

consensus_2537#0      ----AACGACACTACGCAACGG--CCGCAAAC-GTTTGCC-GTGCTCTTCC-GCTGCTGT 123
consensus_2537#1      TGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGT 180
                          ** ************* *  ******** ******* ********** ********

consensus_2537#0      GCTG--CGAAAAGTTGGTGTT-GCAAGGC-GCG--CCGCAGCAAAGCCAAGGCTGAGAGC 177
consensus_2537#1      GCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGC 240
                      ***    ************** ******* **   * ***********************

consensus_2537#0      AAACCCAC-GTC-GTGAACCCTTAAAAATACCCCCAAAAAAAAAG---GAACAACCTCAA 232
consensus_2537#1      AAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAA 300
                      ******** *** ********************** ********    ************

consensus_2537#0      ACCTCTG-GAAGAAGGTACTCACCCC-GTGC-GCGCGTCTTTCGCTCAAC---GCGGCAG 286
consensus_2537#1      ACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAG 360
                      ******* ****************** **** ******************   * * ***

consensus_2537#0      CATCCAGCCATCCGG----ACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAA 342
consensus_2537#1      CATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAA 420
                      ************* *    *   ********************** ***** ********

consensus_2537#0      CACAGCAGCG--CCCGTGTGC-TTGTGCAAACCTGTGTGCCGC-----TGTG-GCACCGC 393
consensus_2537#1      CACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCAC 480
                      *********   ** ****** ************   **  **     **** ***** *

consensus_2537#0      TGGGC--GGCGGTGGGGTT-TGGTGGT-TGTAT-GCCCCGAGCGCAAAG-GCCGGAAG-G 446
consensus_2537#1      TGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTG 540
                      ** *    *********** ******* ***** *************** ******** *

consensus_2537#0      TGAT-GTGTGCGTTTATGGTTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACGACGGGCA 505
consensus_2537#1      TGATTGTGTGCGTT-ATGGTT-CGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNG 598
                      **** ********* ****** ******************************  *  *  

consensus_2537#0      GCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGC-GCCACCGGCGGTAGTGTTTCGGAGT 564
consensus_2537#1      GCAGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG- 657
                      ******* *********  ** * * ******** ************  ********** 

consensus_2537#0      GTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAGGAAAAGGTTCTTTAAAGCCGCGTT 624
consensus_2537#1      ------------------------------------------------------------
                                                                                  

consensus_2537#0      TCGGAAACTACTGAAATTGCCTGCACGCATTCGAGCCGCGACAAGAAAAAANGTGATCCC 684
consensus_2537#1      ------------------------------------------------------------
                                                                                  

consensus_2537#0      CGTACGAGTGCCGTGTGTCTCTATGTGAA 713
consensus_2537#1      -----------------------------