cluster # 2552

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Anopheles gambiae
cluster # 2552 cluster # 2552 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2552#0 length = 734 sequences # 1

consensus_2552#1 length = 676 sequences # 1

consensusID : consensus_2552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 734
fasta sequence

                              [TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACGATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAGCAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATTTTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTNTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAANTGGTATCGCTATAATTTNATAACGATCCGATAAAGATAACTTCGTTTAGGCTTCTAGACACCACCTGACAATGACAGGTCCCTACAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACNAAAGGCTCTTAGACACGGCGTAAAGGCGCCACCAGA]

[+] EMBL AL931426             [TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACGATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAGCAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATTTTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTNTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAANTGGTATCGCTATAATTTNATAACGATCCGATAAAGATAACTTCGTTTAGGCTTCTAGACACCACCTGACAATGACAGGTCCCTACAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACNAAAGGCTCTTAGACACGGCGTAAAGGCGCCACCAGA]




>consensus_2552#0
TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACG
ATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTG
TAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAG
CAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATT
TTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGA
TGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGT
TGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGA
ACTTTGTTTGCGATCGTTCCCATGGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCT
TTGAAGTGAATTATCACTAGCTTNTAGTAAACTACGTTTCGCACACACGTATTACAGGGA
GTTGATCCTTTTTAANTGGTATCGCTATAATTTNATAACGATCCGATAAAGATAACTTCG
TTTAGGCTTCTAGACACCACCTGACAATGACAGGTCCCTACAGCCTAGCAGCGAACTGCA
GGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACNAAAGGCTCTTAGACACGGCGTA
AAGGCGCCACCAGA

consensusID : consensus_2552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGCTTTGCAGCAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGTTTTTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGCGGTTCACGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAGAGGTATGGTGTTTAGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAAATGGTATCGCTATAATTTATAAGATCCGATAAAGATAACTTCGTTTAGCTTCTAGCACCACCTGACAATGACAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACAAAGGCTCTTAGCACGCGTAAGGCGCCACAGAAGTAATATGTCCTATCCCATGT]

[+] EMBL BM578661             [CCGGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGCTTTGCAGCAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGTTTTTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGCGGTTCACGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAGAGGTATGGTGTTTAGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAAATGGTATCGCTATAATTTATAAGATCCGATAAAGATAACTTCGTTTAGCTTCTAGCACCACCTGACAATGACAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACAAAGGCTCTTAGCACGCGTAAGGCGCCACAGAAGTAATATGTCCTATCCCATGT]




>consensus_2552#1
CCGGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAA
CAATGCAACAGTGCTTTGCAGCAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTAC
CAGTGTTTGAGGCCAGCGTTTTTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTT
AGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTT
CCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGCGGT
TCACGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAG
AGGTATGGTGTTTAGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAA
TTATCACTAGCTTTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTT
TTAAATGGTATCGCTATAATTTATAAGATCCGATAAAGATAACTTCGTTTAGCTTCTAGC
ACCACCTGACAATGACAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGT
TGAAAACCCGTGAATCATCTACAAAGGCTCTTAGCACGCGTAAGGCGCCACAGAAGTAAT
ATGTCCTATCCCATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2552#0      TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACG 60
consensus_2552#1      ------------------------------------------------------------
                                                                                  

consensus_2552#0      ATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTG 120
consensus_2552#1      ---------------------------------------CCGGCTACAACTCTCTAGCTG 21
                                                                ******************

consensus_2552#0      TAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAG 180
consensus_2552#1      TAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGCTTTGCAG 81
                      **************************************************** *******

consensus_2552#0      CAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATT 240
consensus_2552#1      CAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGTTT 141
                      ***** * ** ********************************************** **

consensus_2552#0      TTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGA 300
consensus_2552#1      TTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGA 201
                      ******* ****************************************************

consensus_2552#0      TGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGT 360
consensus_2552#1      TGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGT 261
                      ************************************************************

consensus_2552#0      TGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGA 420
consensus_2552#1      TGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGG-CGGTTCACGATCATCGTCCTTCGA 320
                      *********************************** ****** *****************

consensus_2552#0      ACTTTGTTTGCGATCGTTCCCATG------------------------------GCAGTC 450
consensus_2552#1      ACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAGAGGTATGGTGTTTAGCAGTC 380
                      ************************                              ******

consensus_2552#0      CAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTNTAGTAA 510
consensus_2552#1      CAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTT-AGTAA 439
                      *****************************************************  *****

consensus_2552#0      ACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAANTGGTATCGCTATAA 570
consensus_2552#1      ACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAAATGGTATCGCTATAA 499
                      ********************************************* **************

consensus_2552#0      TTTNATAACGATCCGATAAAGATAACTTCGTTTAGGCTTCTAGACACCACCTGACAATGA 630
consensus_2552#1      TTTA-TAA-GATCCGATAAAGATAACTTCGTTTAG-CTTCTAG-CACCACCTGACAATGA 555
                      ***  *** ************************** ******* ****************

consensus_2552#0      CAGGTCCCTACAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAAT 690
consensus_2552#1      CAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAAT 615
                      *** *** * **************************************************

consensus_2552#0      CATCTACNAAAGGCTCTTAGACACGGCGTAAAGGCGCCACCAGA---------------- 734
consensus_2552#1      CATCTACAAA-GGCTCTTAG-CACG-CGTAA-GGCGCCACAGAAGTAATATGTCCTATCC 671
                      ******* ** ********* **** ***** ********   *                

consensus_2552#0      -----
consensus_2552#1      CATGT 676