cluster # 2553

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Anopheles gambiae
cluster # 2553 cluster # 2553 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2553#0 length = 644 sequences # 1

consensus_2553#1 length = 229 sequences # 1

consensusID : consensus_2553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [GCAGATNGCCGAGTTGGTTGACTTGACTTTTACGGTTGCGAAGTGTCGACGGTCACCGGCTTAGTGAATGGGGACGACATTCCACCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTTTTGCACTTGACCTTTTTACCTGTGTTTGCCGGAAAGGTGTTCCCTGAACCTGTGTCACACCTGTGGGCTTTAAGGGAACATTGTGTGGGAACCGGAACAATTTCCCAACCCCAACAAATGCCAACCGGAAAACCGTAAATTCCGCCGCCGATTCCCTTTCCTTGAAACCACCATTCCATACCCGCATTATGACGCTTCTCATCGCCGTGCTTTGCAGGCATTCGCTGTCACTGTTTCAGGAACCCTGATTTGTGGCGGTTGCAGTGCGTGTGTGTGATGCCAAGGGACAAACCAGGAAACACAAGCGCCCGGGAGCAGTTACACTTATAAGGTATTTAACTTTTTCGTTCAACATTCCCCTTATCTGTGTGCTGTGGTGACAGCAAGGATGGCANAGTTCTGTGATGTCCGTGCAGATTTCAGTAACACCAGGGGGAAACTCTGGTCGCGCTGTTTGTTGTGTATTTATAGTATTATTATTTCATTTACGGCTAGAATTAGGAGCACTGTGCGGGAGAACGGAT]

[+] EMBL AL931443             [GCAGATNGCCGAGTTGGTTGACTTGACTTTTACGGTTGCGAAGTGTCGACGGTCACCGGCTTAGTGAATGGGGACGACATTCCACCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTTTTGCACTTGACCTTTTTACCTGTGTTTGCCGGAAAGGTGTTCCCTGAACCTGTGTCACACCTGTGGGCTTTAAGGGAACATTGTGTGGGAACCGGAACAATTTCCCAACCCCAACAAATGCCAACCGGAAAACCGTAAATTCCGCCGCCGATTCCCTTTCCTTGAAACCACCATTCCATACCCGCATTATGACGCTTCTCATCGCCGTGCTTTGCAGGCATTCGCTGTCACTGTTTCAGGAACCCTGATTTGTGGCGGTTGCAGTGCGTGTGTGTGATGCCAAGGGACAAACCAGGAAACACAAGCGCCCGGGAGCAGTTACACTTATAAGGTATTTAACTTTTTCGTTCAACATTCCCCTTATCTGTGTGCTGTGGTGACAGCAAGGATGGCANAGTTCTGTGATGTCCGTGCAGATTTCAGTAACACCAGGGGGAAACTCTGGTCGCGCTGTTTGTTGTGTATTTATAGTATTATTATTTCATTTACGGCTAGAATTAGGAGCACTGTGCGGGAGAACGGAT]




>consensus_2553#0
GCAGATNGCCGAGTTGGTTGACTTGACTTTTACGGTTGCGAAGTGTCGACGGTCACCGGC
TTAGTGAATGGGGACGACATTCCACCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTT
TTGCACTTGACCTTTTTACCTGTGTTTGCCGGAAAGGTGTTCCCTGAACCTGTGTCACAC
CTGTGGGCTTTAAGGGAACATTGTGTGGGAACCGGAACAATTTCCCAACCCCAACAAATG
CCAACCGGAAAACCGTAAATTCCGCCGCCGATTCCCTTTCCTTGAAACCACCATTCCATA
CCCGCATTATGACGCTTCTCATCGCCGTGCTTTGCAGGCATTCGCTGTCACTGTTTCAGG
AACCCTGATTTGTGGCGGTTGCAGTGCGTGTGTGTGATGCCAAGGGACAAACCAGGAAAC
ACAAGCGCCCGGGAGCAGTTACACTTATAAGGTATTTAACTTTTTCGTTCAACATTCCCC
TTATCTGTGTGCTGTGGTGACAGCAAGGATGGCANAGTTCTGTGATGTCCGTGCAGATTT
CAGTAACACCAGGGGGAAACTCTGGTCGCGCTGTTTGTTGTGTATTTATAGTATTATTAT
TTCATTTACGGCTAGAATTAGGAGCACTGTGCGGGAGAACGGAT

consensusID : consensus_2553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [CAACATGCAGGCCATTCTCTCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTTTGCACTTGACCTTTTACCGGTTGCGAAGTGTCCGACCGGTCACCGGCTTAGGAATGGGGACGACATTCCACCCCACAAGCACGAAACTATCCCCCATCCTTCTGAAACACATTCCATACCGCATACACGCTTCTCATCGCCGGCTTGCAGCATCGCTGTCACGTTCAGAACCGA]

[+] EMBL BX618769             [CAACATGCAGGCCATTCTCTCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTTTGCACTTGACCTTTTACCGGTTGCGAAGTGTCCGACCGGTCACCGGCTTAGGAATGGGGACGACATTCCACCCCACAAGCACGAAACTATCCCCCATCCTTCTGAAACACATTCCATACCGCATACACGCTTCTCATCGCCGGCTTGCAGCATCGCTGTCACGTTCAGAACCGA]




>consensus_2553#1
CAACATGCAGGCCATTCTCTCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTTTGCAC
TTGACCTTTTACCGGTTGCGAAGTGTCCGACCGGTCACCGGCTTAGGAATGGGGACGACA
TTCCACCCCACAAGCACGAAACTATCCCCCATCCTTCTGAAACACATTCCATACCGCATA
CACGCTTCTCATCGCCGGCTTGCAGCATCGCTGTCACGTTCAGAACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2553#0      GCAGATNGCCGAGTTGGTTGACTTGACTTTTACGGTTGCGAAGTGTCGACGGTCACCGGC 60
consensus_2553#1      ------------------------------------------------------------
                                                                                  

consensus_2553#0      TTAGTGAATGGGGACGACATTCCACCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTT 120
consensus_2553#1      -----CAACATGCAGGCCATTCTCTCCCGTTCCTCCGCTCCATCAGCTCTCCCAGTGGTT 55
                            **   * * * *****   ***********************************

consensus_2553#0      TTGCACTTGACCTTTTTACCTGTGTTTGCCGGAAAGGTGTTCCCTGAACCTGTGTCACAC 180
consensus_2553#1      T-GCACTTGACCTTTT-ACC---GGTTGC----GAAGTGTCC----GACCGGT----CAC 98
                      * ************** ***   * ****     * **** *     *** **    ***

consensus_2553#0      CTGTGGGCTTTAAGGGAACATTGTGTGGGAACCGGAACAATTTCCCAACCCCAACAAATG 240
consensus_2553#1      C----GGCTT----------------AGGAATGGGGACGACATTCCACCCC--ACAAGCA 136
                      *    *****                 ****  ** ** *  * *** ***  ****   

consensus_2553#0      CCAACCGGAAAACCGTAAATTCCGCCGCCGATTCCCTTTCCTTGAAACCACCATTCCATA 300
consensus_2553#1      C-------GAAACTAT---------------CCCCCATCCTTCTGAAACAC-ATTCCATA 173
                      *        ****  *                 *** * * *   ** *** ********

consensus_2553#0      CCCGCATTATGACGCTTCTCATCGCCGTGCTTTGCAGGCATTCGCTGTCACTGTTTCAGG 360
consensus_2553#1      CC-GCATAC--ACGCTTCTCATCGCCG--GCTTGCAG-CAT-CGCTGTCACG--TTCAGA 224
                      ** ****    ****************    ****** *** *********   ***** 

consensus_2553#0      AACCCTGATTTGTGGCGGTTGCAGTGCGTGTGTGTGATGCCAAGGGACAAACCAGGAAAC 420
consensus_2553#1      ACCGA------------------------------------------------------- 229
                      * *                                                         

consensus_2553#0      ACAAGCGCCCGGGAGCAGTTACACTTATAAGGTATTTAACTTTTTCGTTCAACATTCCCC 480
consensus_2553#1      ------------------------------------------------------------
                                                                                  

consensus_2553#0      TTATCTGTGTGCTGTGGTGACAGCAAGGATGGCANAGTTCTGTGATGTCCGTGCAGATTT 540
consensus_2553#1      ------------------------------------------------------------
                                                                                  

consensus_2553#0      CAGTAACACCAGGGGGAAACTCTGGTCGCGCTGTTTGTTGTGTATTTATAGTATTATTAT 600
consensus_2553#1      ------------------------------------------------------------
                                                                                  

consensus_2553#0      TTCATTTACGGCTAGAATTAGGAGCACTGTGCGGGAGAACGGAT 644
consensus_2553#1      --------------------------------------------