cluster # 2563

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Anopheles gambiae
cluster # 2563 cluster # 2563 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2563#0 length = 401 sequences # 1

consensus_2563#1 length = 255 sequences # 1

consensusID : consensus_2563#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [AAGAATCGCCCGAGGTTAATAGAGATAAGACAAAAGACGTGTACGTAAAAACGGAAAACAAATAAATAAATGCCGTGAGCTTTAGCTAAATGATGAAAGCAAACAAACACACAAACAATTTAAAGGAATGAATGTCCCGCAGTCCCAGTGTGTGAGAGAATGTTCGAAATAGGTTCGTTTTTCCGCCTTCCGTGTGGCTTTCCGGTTCGTTGCTATGGAAAAGACAAAAAGTAAGTAAGTAAGTTACATCCAAACGATGCCAGTAAACCTCCTGTCCCTAACCAAAAACCAACCAAATCATGTAAAGACCGCCCATGACCATGACTGATGAATAAATCGAGCTCTGAAAATTAACTTCAAATAACTAAACCTAGTGTGTCCGTAGGAGTTGCCGGTGCGCA]

[+] EMBL AL931593             [AAGAATCGCCCGAGGTTAATAGAGATAAGACAAAAGACGTGTACGTAAAAACGGAAAACAAATAAATAAATGCCGTGAGCTTTAGCTAAATGATGAAAGCAAACAAACACACAAACAATTTAAAGGAATGAATGTCCCGCAGTCCCAGTGTGTGAGAGAATGTTCGAAATAGGTTCGTTTTTCCGCCTTCCGTGTGGCTTTCCGGTTCGTTGCTATGGAAAAGACAAAAAGTAAGTAAGTAAGTTACATCCAAACGATGCCAGTAAACCTCCTGTCCCTAACCAAAAACCAACCAAATCATGTAAAGACCGCCCATGACCATGACTGATGAATAAATCGAGCTCTGAAAATTAACTTCAAATAACTAAACCTAGTGTGTCCGTAGGAGTTGCCGGTGCGCA]




>consensus_2563#0
AAGAATCGCCCGAGGTTAATAGAGATAAGACAAAAGACGTGTACGTAAAAACGGAAAACA
AATAAATAAATGCCGTGAGCTTTAGCTAAATGATGAAAGCAAACAAACACACAAACAATT
TAAAGGAATGAATGTCCCGCAGTCCCAGTGTGTGAGAGAATGTTCGAAATAGGTTCGTTT
TTCCGCCTTCCGTGTGGCTTTCCGGTTCGTTGCTATGGAAAAGACAAAAAGTAAGTAAGT
AAGTTACATCCAAACGATGCCAGTAAACCTCCTGTCCCTAACCAAAAACCAACCAAATCA
TGTAAAGACCGCCCATGACCATGACTGATGAATAAATCGAGCTCTGAAAATTAACTTCAA
ATAACTAAACCTAGTGTGTCCGTAGGAGTTGCCGGTGCGCA

consensusID : consensus_2563#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GCAAAAGTAGAGAAAGCAAACAACAACAAAACAAAACGAAATAAAGCGGAAACAAAAACGCTAGAGAGAAATAGAAAACAAAGGAATAAACTAGAACAAAACAAATAGAGATAAAGACAAAAGAAGTGTACGTAAAAACGGAAAACAAATAAATAAATGCGGGGAGCTTTAGCTAAAGGATGAAAGCAAAAAAATATAAAAATAATACAAAGGAATGAATGCGGAGGAGTTAAAGTGGGGGAGAGAATGACAGAA]

[+] EMBL BX613074             [GCAAAAGTAGAGAAAGCAAACAACAACAAAACAAAACGAAATAAAGCGGAAACAAAAACGCTAGAGAGAAATAGAAAACAAAGGAATAAACTAGAACAAAACAAATAGAGATAAAGACAAAAGAAGTGTACGTAAAAACGGAAAACAAATAAATAAATGCGGGGAGCTTTAGCTAAAGGATGAAAGCAAAAAAATATAAAAATAATACAAAGGAATGAATGCGGAGGAGTTAAAGTGGGGGAGAGAATGACAGAA]




>consensus_2563#1
GCAAAAGTAGAGAAAGCAAACAACAACAAAACAAAACGAAATAAAGCGGAAACAAAAACG
CTAGAGAGAAATAGAAAACAAAGGAATAAACTAGAACAAAACAAATAGAGATAAAGACAA
AAGAAGTGTACGTAAAAACGGAAAACAAATAAATAAATGCGGGGAGCTTTAGCTAAAGGA
TGAAAGCAAAAAAATATAAAAATAATACAAAGGAATGAATGCGGAGGAGTTAAAGTGGGG
GAGAGAATGACAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2563#0      ------------------------------------------------------------
consensus_2563#1      GCAAAAGTAGAGAAAGCAAACAACAACAAAACAAAACGAAATAAAGCGGAAACAAAAACG 60
                                                                                  

consensus_2563#0      --------------------------AAGAATCGCCCGAGGTTAATAGAGATAA-GACAA 33
consensus_2563#1      CTAGAGAGAAATAGAAAACAAAGGAATAAACTAGAACAAAACAAATAGAGATAAAGACAA 120
                                                 * * * *  * *    *********** *****

consensus_2563#0      AAGACGTGTACGTAAAAACGGAAAACAAATAAATAAATGCCGTGAGCTTTAGCTAAATGA 93
consensus_2563#1      AAGAAGTGTACGTAAAAACGGAAAACAAATAAATAAATGCGGGGAGCTTTAGCTAAAGGA 180
                      **** *********************************** * ************** **

consensus_2563#0      TGAAAGCAAACAAACACACAAACAATTTAAAGGAATGAATGTCCCGCAGTCCCAGTGTGT 153
consensus_2563#1      TGAAAGCAAAAAAATATAAAAATAATACAAAGGAATGAATGCGGAGGAGTTAAAGTGGGG 240
                      ********** *** * * *** ***  *************    * ***   **** * 

consensus_2563#0      GAGAGAATGTTCGAAATAGGTTCGTTTTTCCGCCTTCCGTGTGGCTTTCCGGTTCGTTGC 213
consensus_2563#1      GAGAGAATGACAGAA--------------------------------------------- 255
                      *********   ***                                             

consensus_2563#0      TATGGAAAAGACAAAAAGTAAGTAAGTAAGTTACATCCAAACGATGCCAGTAAACCTCCT 273
consensus_2563#1      ------------------------------------------------------------
                                                                                  

consensus_2563#0      GTCCCTAACCAAAAACCAACCAAATCATGTAAAGACCGCCCATGACCATGACTGATGAAT 333
consensus_2563#1      ------------------------------------------------------------
                                                                                  

consensus_2563#0      AAATCGAGCTCTGAAAATTAACTTCAAATAACTAAACCTAGTGTGTCCGTAGGAGTTGCC 393
consensus_2563#1      ------------------------------------------------------------
                                                                                  

consensus_2563#0      GGTGCGCA 401
consensus_2563#1      --------