cluster # 2571

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Anopheles gambiae
cluster # 2571 cluster # 2571 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2571#0 length = 849 sequences # 1

consensus_2571#1 length = 290 sequences # 1

consensusID : consensus_2571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 849
fasta sequence

                              [CAGAATCGCCCGAGGTTTAACGATGGGTTGCTGAAGAAACTGGTGCTTGCTTCACTCGTGACGACCGCACTGTGTTGTGGTGCATTGCTTGCGCTGTGGATATGGCTCGGTGTGGAAATCATTCCCAATACAAATACCGCGATCCACGCCTACTGCAAGATACGTTCGTTCGATTACATTATACGTATGTGTTGCTTGGAACTTGCGGGATGTTGTGTATGGCCAATCGACTGTCCTGAAAATCCTGAACTGTAACCTGTGCTGCTTGGTGGAAGCTTGGTGATACNGTATTTGGTGTGCCTGCTTCCATACATCCCCCTGTATACAGCACTGGCATGCATGTGGTACCAAGTACTGATTGGGCTATATCCGTGGACGACACACACACAGAATATTACTNCCTCCCCACGGTCTAAGGAAAACTAACATCAAACAAACTTGCTACCACNGACTNGTGTCACATAATGTGACTTGGGGCTGGCCTCCGCGGGACCAACATTTNACACCTNACCATTGTTTTGCAATTNNACCACGNGNAGTTATAACCGGCGAAGNNGGATATNTTGAACCGGGGTANGGGNGGAANGCCTGGTGTCAAGGGTTGCACACCGGTTGCAATTANGGGCAAGGCCTTGGCGCNACAGCTGCCGTATCTTGAAACACCCTTATAATTCCTTGGNGCACTTAANGNGCCTGGACACACCCGGCNACCGAGGTAGTCGACCATTTNGCTTGCAACCCGTGTGTACAGCACCGACATAGAATGANNTAACCCACGANTGAANTATGGACATATCNCAAGCCACAACATGTGAACATNTGCCCGNNAACACACGCCTTGCACCTAAG]

[+] EMBL AL931848             [CAGAATCGCCCGAGGTTTAACGATGGGTTGCTGAAGAAACTGGTGCTTGCTTCACTCGTGACGACCGCACTGTGTTGTGGTGCATTGCTTGCGCTGTGGATATGGCTCGGTGTGGAAATCATTCCCAATACAAATACCGCGATCCACGCCTACTGCAAGATACGTTCGTTCGATTACATTATACGTATGTGTTGCTTGGAACTTGCGGGATGTTGTGTATGGCCAATCGACTGTCCTGAAAATCCTGAACTGTAACCTGTGCTGCTTGGTGGAAGCTTGGTGATACNGTATTTGGTGTGCCTGCTTCCATACATCCCCCTGTATACAGCACTGGCATGCATGTGGTACCAAGTACTGATTGGGCTATATCCGTGGACGACACACACACAGAATATTACTNCCTCCCCACGGTCTAAGGAAAACTAACATCAAACAAACTTGCTACCACNGACTNGTGTCACATAATGTGACTTGGGGCTGGCCTCCGCGGGACCAACATTTNACACCTNACCATTGTTTTGCAATTNNACCACGNGNAGTTATAACCGGCGAAGNNGGATATNTTGAACCGGGGTANGGGNGGAANGCCTGGTGTCAAGGGTTGCACACCGGTTGCAATTANGGGCAAGGCCTTGGCGCNACAGCTGCCGTATCTTGAAACACCCTTATAATTCCTTGGNGCACTTAANGNGCCTGGACACACCCGGCNACCGAGGTAGTCGACCATTTNGCTTGCAACCCGTGTGTACAGCACCGACATAGAATGANNTAACCCACGANTGAANTATGGACATATCNCAAGCCACAACATGTGAACATNTGCCCGNNAACACACGCCTTGCACCTAAG]




>consensus_2571#0
CAGAATCGCCCGAGGTTTAACGATGGGTTGCTGAAGAAACTGGTGCTTGCTTCACTCGTG
ACGACCGCACTGTGTTGTGGTGCATTGCTTGCGCTGTGGATATGGCTCGGTGTGGAAATC
ATTCCCAATACAAATACCGCGATCCACGCCTACTGCAAGATACGTTCGTTCGATTACATT
ATACGTATGTGTTGCTTGGAACTTGCGGGATGTTGTGTATGGCCAATCGACTGTCCTGAA
AATCCTGAACTGTAACCTGTGCTGCTTGGTGGAAGCTTGGTGATACNGTATTTGGTGTGC
CTGCTTCCATACATCCCCCTGTATACAGCACTGGCATGCATGTGGTACCAAGTACTGATT
GGGCTATATCCGTGGACGACACACACACAGAATATTACTNCCTCCCCACGGTCTAAGGAA
AACTAACATCAAACAAACTTGCTACCACNGACTNGTGTCACATAATGTGACTTGGGGCTG
GCCTCCGCGGGACCAACATTTNACACCTNACCATTGTTTTGCAATTNNACCACGNGNAGT
TATAACCGGCGAAGNNGGATATNTTGAACCGGGGTANGGGNGGAANGCCTGGTGTCAAGG
GTTGCACACCGGTTGCAATTANGGGCAAGGCCTTGGCGCNACAGCTGCCGTATCTTGAAA
CACCCTTATAATTCCTTGGNGCACTTAANGNGCCTGGACACACCCGGCNACCGAGGTAGT
CGACCATTTNGCTTGCAACCCGTGTGTACAGCACCGACATAGAATGANNTAACCCACGAN
TGAANTATGGACATATCNCAAGCCACAACATGTGAACATNTGCCCGNNAACACACGCCTT
GCACCTAAG

consensusID : consensus_2571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [CCGAGGNTCGAACACTGGGAAAACCCGGGATGGGTTTTGCCTGAAGAAACTACTGCTTGTTTCACTCGTGACGACGCACTGTGTTGTGGTGCATTGCTTTCGCTGTGGATATGGCTTGGTGTGGAAATCATTCCCAATCAAATCCGCGATCCACGCCTACTGCAAGATCGTTCGTTCGATTACATTCGTCGGTGCTGGAACTGCGGGATGTGTGTTGGCCAATCGACTGGTCCGAAAATCCGAACGTAACCGTGCTGCTGGTGGAAGCTGGTGATACGTTTGGGGGGGGG]

[+] EMBL AL931656             [CCGAGGNTCGAACACTGGGAAAACCCGGGATGGGTTTTGCCTGAAGAAACTACTGCTTGTTTCACTCGTGACGACGCACTGTGTTGTGGTGCATTGCTTTCGCTGTGGATATGGCTTGGTGTGGAAATCATTCCCAATCAAATCCGCGATCCACGCCTACTGCAAGATCGTTCGTTCGATTACATTCGTCGGTGCTGGAACTGCGGGATGTGTGTTGGCCAATCGACTGGTCCGAAAATCCGAACGTAACCGTGCTGCTGGTGGAAGCTGGTGATACGTTTGGGGGGGGG]




>consensus_2571#1
CCGAGGNTCGAACACTGGGAAAACCCGGGATGGGTTTTGCCTGAAGAAACTACTGCTTGT
TTCACTCGTGACGACGCACTGTGTTGTGGTGCATTGCTTTCGCTGTGGATATGGCTTGGT
GTGGAAATCATTCCCAATCAAATCCGCGATCCACGCCTACTGCAAGATCGTTCGTTCGAT
TACATTCGTCGGTGCTGGAACTGCGGGATGTGTGTTGGCCAATCGACTGGTCCGAAAATC
CGAACGTAACCGTGCTGCTGGTGGAAGCTGGTGATACGTTTGGGGGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2571#0      -------CAGAATCGCCCGAGGTTTAACGATGGGTTG---CTGAAGAAACTGGTGCTTGC 50
consensus_2571#1      CCGAGGNTCGAACACTGGGAAAACCCGGGATGGGTTTTGCCTGAAGAAACTACTGCTTGT 60
                               ***      **        ********    ***********  ****** 

consensus_2571#0      TTCACTCGTGACGACCGCACTGTGTTGTGGTGCATTGCTTGCGCTGTGGATATGGCTCGG 110
consensus_2571#1      TTCACTCGTGACGAC-GCACTGTGTTGTGGTGCATTGCTTTCGCTGTGGATATGGCTTGG 119
                      *************** ************************ **************** **

consensus_2571#0      TGTGGAAATCATTCCCAATACAAATACCGCGATCCACGCCTACTGCAAGATACGTTCGTT 170
consensus_2571#1      TGTGGAAATCATTCCCAAT-CAAAT-CCGCGATCCACGCCTACTGCAAGAT-CGTTCGTT 176
                      ******************* ***** ************************* ********

consensus_2571#0      CGATTACATTATACGTATGTGTTGCTTGGAACTTGCGGGATGTTGTGTATGGCCAATCGA 230
consensus_2571#1      CGATTACATT---CGTCGGTGCTG----GAACT-GCGGGATGT-GTGT-TGGCCAATCGA 226
                      **********   ***  *** **    ***** ********* **** ***********

consensus_2571#0      CTGTCCTGAAAATCCTGAACTGTAACCTGTGCTGCTTGGTGGAAGCTTGGTGATACNGTA 290
consensus_2571#1      CTGGTCCGAAAATCC-GAAC-GTAACC-GTGCTGCT-GGTGGAAGCT-GGTGATACGTTT 281
                      ***  * ******** **** ****** ******** ********** ********  * 

consensus_2571#0      TTTGGTGTGCCTGCTTCCATACATCCCCCTGTATACAGCACTGGCATGCATGTGGTACCA 350
consensus_2571#1      GGGGGGGGG--------------------------------------------------- 290
                         ** * *                                                   

consensus_2571#0      AGTACTGATTGGGCTATATCCGTGGACGACACACACACAGAATATTACTNCCTCCCCACG 410
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      GTCTAAGGAAAACTAACATCAAACAAACTTGCTACCACNGACTNGTGTCACATAATGTGA 470
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      CTTGGGGCTGGCCTCCGCGGGACCAACATTTNACACCTNACCATTGTTTTGCAATTNNAC 530
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      CACGNGNAGTTATAACCGGCGAAGNNGGATATNTTGAACCGGGGTANGGGNGGAANGCCT 590
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      GGTGTCAAGGGTTGCACACCGGTTGCAATTANGGGCAAGGCCTTGGCGCNACAGCTGCCG 650
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      TATCTTGAAACACCCTTATAATTCCTTGGNGCACTTAANGNGCCTGGACACACCCGGCNA 710
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      CCGAGGTAGTCGACCATTTNGCTTGCAACCCGTGTGTACAGCACCGACATAGAATGANNT 770
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      AACCCACGANTGAANTATGGACATATCNCAAGCCACAACATGTGAACATNTGCCCGNNAA 830
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      CACACGCCTTGCACCTAAG 849
consensus_2571#1      -------------------