cluster # 2577

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Anopheles gambiae
cluster # 2577 cluster # 2577 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2577#0 length = 814 sequences # 1

consensus_2577#1 length = 555 sequences # 1

consensusID : consensus_2577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 814
fasta sequence

                              [GTGCAGAGCGCGATTTTCCATTCAATTTTTCCGCACGTGAGCAACAGCAAAAGAGAGTGTGCAAAGAAAGGTGTCTGGGTAGCTTTTTTGGTAGGCTTTTTTTTAGAATTGCTGTTTAATTAAAGTGAGAAAACAAAGTGTTGGCAAGTGGTTTGCAAACGGTTTGAAGTGCAAGTGTTTTCCACCGCTTGCTTCGATAGGCGAGCTGAGAGTTTTGCGTGTGCTTTTCCTGTGCTTAGTGACAGTAACGTTCAAGCAGAGCAGCGTGGCAGCTACTGGGAGCAGTTACCCATCTTCGGCACGACACGATGTTTGGCAATCGATTTTCACTGTTGCTGCTCGGCGCTACCCTCGTGCTTGGGTGCGCACTGGCGGAGAAGGCACCGGCCACCGTCGCGAAAACCATATCGACCGACCACGACACGAACGCGAGCCCCGGAGCGTCCCTGGTGACCGGAAAAGCTGTCCGGCTCGGCAAGGCCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAGCGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCATGGGCCGCACAAGAACGCTAATCGGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGTTCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGGCGGANGAATCCCGCCACTACGGNCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGCCCCGAATCCGTACTACTACACGAACAACGCCCCG]

[+] EMBL BX625287             [GTGCAGAGCGCGATTTTCCATTCAATTTTTCCGCACGTGAGCAACAGCAAAAGAGAGTGTGCAAAGAAAGGTGTCTGGGTAGCTTTTTTGGTAGGCTTTTTTTTAGAATTGCTGTTTAATTAAAGTGAGAAAACAAAGTGTTGGCAAGTGGTTTGCAAACGGTTTGAAGTGCAAGTGTTTTCCACCGCTTGCTTCGATAGGCGAGCTGAGAGTTTTGCGTGTGCTTTTCCTGTGCTTAGTGACAGTAACGTTCAAGCAGAGCAGCGTGGCAGCTACTGGGAGCAGTTACCCATCTTCGGCACGACACGATGTTTGGCAATCGATTTTCACTGTTGCTGCTCGGCGCTACCCTCGTGCTTGGGTGCGCACTGGCGGAGAAGGCACCGGCCACCGTCGCGAAAACCATATCGACCGACCACGACACGAACGCGAGCCCCGGAGCGTCCCTGGTGACCGGAAAAGCTGTCCGGCTCGGCAAGGCCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAGCGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCATGGGCCGCACAAGAACGCTAATCGGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGTTCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGGCGGANGAATCCCGCCACTACGGNCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGCCCCGAATCCGTACTACTACACGAACAACGCCCCG]




>consensus_2577#0
GTGCAGAGCGCGATTTTCCATTCAATTTTTCCGCACGTGAGCAACAGCAAAAGAGAGTGT
GCAAAGAAAGGTGTCTGGGTAGCTTTTTTGGTAGGCTTTTTTTTAGAATTGCTGTTTAAT
TAAAGTGAGAAAACAAAGTGTTGGCAAGTGGTTTGCAAACGGTTTGAAGTGCAAGTGTTT
TCCACCGCTTGCTTCGATAGGCGAGCTGAGAGTTTTGCGTGTGCTTTTCCTGTGCTTAGT
GACAGTAACGTTCAAGCAGAGCAGCGTGGCAGCTACTGGGAGCAGTTACCCATCTTCGGC
ACGACACGATGTTTGGCAATCGATTTTCACTGTTGCTGCTCGGCGCTACCCTCGTGCTTG
GGTGCGCACTGGCGGAGAAGGCACCGGCCACCGTCGCGAAAACCATATCGACCGACCACG
ACACGAACGCGAGCCCCGGAGCGTCCCTGGTGACCGGAAAAGCTGTCCGGCTCGGCAAGG
CCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAG
CGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCATGGGCCGCACAAGAACGCTAATC
GGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGT
TCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGG
CGGANGAATCCCGCCACTACGGNCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGC
CCCGAATCCGTACTACTACACGAACAACGCCCCG

consensusID : consensus_2577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [AGGCGGNCCGAGGCCGGAAAAGCTGTCCGGCTCGGCAAGGCCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAGCGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCACGGGCCGCACAAGAACGCTAATCGGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGTTCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGGCGGAGGAATCCCGCCACTACGGCCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGCCCCCGAATCCGTACTACTACACGAACAACGCCCCGCTGAACAGCATTTCGGACGTCGGCAAGCAGGTCCCGGTTGGATTCAAATCGAACGGCAAACCGGCACGCATCTACCACTGGAACATTCCGGTGCTGAAGAAGATGCTCGGCGCGAAGCAGAGCCGCCATCCGAACTCGCGCCGCCACGATGACATAGACGAGCTGATCGACATTAAGGAA]

[+] EMBL BX620500             [AGGCGGNCCGAGGCCGGAAAAGCTGTCCGGCTCGGCAAGGCCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAGCGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCACGGGCCGCACAAGAACGCTAATCGGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGTTCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGGCGGAGGAATCCCGCCACTACGGCCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGCCCCCGAATCCGTACTACTACACGAACAACGCCCCGCTGAACAGCATTTCGGACGTCGGCAAGCAGGTCCCGGTTGGATTCAAATCGAACGGCAAACCGGCACGCATCTACCACTGGAACATTCCGGTGCTGAAGAAGATGCTCGGCGCGAAGCAGAGCCGCCATCCGAACTCGCGCCGCCACGATGACATAGACGAGCTGATCGACATTAAGGAA]




>consensus_2577#1
AGGCGGNCCGAGGCCGGAAAAGCTGTCCGGCTCGGCAAGGCCAGCAAAAAGTCCACCCCG
ATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAGCGCAGTCGAACGAGCTGGAC
GCAGGAGCGCACCATCACGGGCCGCACAAGAACGCTAATCGGTTCGCGCCGAAATCGCTG
GACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGTTCGGCAAGCTCGGCCTGGGC
AAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGGCGGAGGAATCCCGCCACTAC
GGCCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGCCCCCGAATCCGTACTACTAC
ACGAACAACGCCCCGCTGAACAGCATTTCGGACGTCGGCAAGCAGGTCCCGGTTGGATTC
AAATCGAACGGCAAACCGGCACGCATCTACCACTGGAACATTCCGGTGCTGAAGAAGATG
CTCGGCGCGAAGCAGAGCCGCCATCCGAACTCGCGCCGCCACGATGACATAGACGAGCTG
ATCGACATTAAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2577#0      GTGCAGAGCGCGATTTTCCATTCAATTTTTCCGCACGTGAGCAACAGCAAAAGAGAGTGT 60
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      GCAAAGAAAGGTGTCTGGGTAGCTTTTTTGGTAGGCTTTTTTTTAGAATTGCTGTTTAAT 120
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      TAAAGTGAGAAAACAAAGTGTTGGCAAGTGGTTTGCAAACGGTTTGAAGTGCAAGTGTTT 180
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      TCCACCGCTTGCTTCGATAGGCGAGCTGAGAGTTTTGCGTGTGCTTTTCCTGTGCTTAGT 240
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      GACAGTAACGTTCAAGCAGAGCAGCGTGGCAGCTACTGGGAGCAGTTACCCATCTTCGGC 300
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      ACGACACGATGTTTGGCAATCGATTTTCACTGTTGCTGCTCGGCGCTACCCTCGTGCTTG 360
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      GGTGCGCACTGGCGGAGAAGGCACCGGCCACCGTCGCGAAAACCATATCGACCGACCACG 420
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      ACACGAACGCGAGCCCCGGAGCGTCCCTGGTGACCGGAAAAGCTGTCCGGCTCGGCAAGG 480
consensus_2577#1      ------------------AGGCGGNCC--GAGGCCGGAAAAGCTGTCCGGCTCGGCAAGG 40
                                          ***  **  * * ***************************

consensus_2577#0      CCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAG 540
consensus_2577#1      CCAGCAAAAAGTCCACCCCGATCACGTACATCAAGACGCTCGCGATGGACAGCAGTGCAG 100
                      ************************************************************

consensus_2577#0      CGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCATGGGCCGCACAAGAACGCTAATC 600
consensus_2577#1      CGCAGTCGAACGAGCTGGACGCAGGAGCGCACCATCACGGGCCGCACAAGAACGCTAATC 160
                      ************************************* **********************

consensus_2577#0      GGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGT 660
consensus_2577#1      GGTTCGCGCCGAAATCGCTGGACGTTTCCTCCAAGAAGGATCTGAGCAATGCGGAGCTGT 220
                      ************************************************************

consensus_2577#0      TCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGG 720
consensus_2577#1      TCGGCAAGCTCGGCCTGGGCAAGGTACGTCCCGCGACCAACCACCACAAGAAGCGGCTGG 280
                      ************************************************************

consensus_2577#0      CGGANGAATCCCGCCACTACGGNCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGC 780
consensus_2577#1      CGGAGGAATCCCGCCACTACGGCCGTCCGGACGATTCGCACATGTATGTCATCAAGCTGC 340
                      **** ***************** *************************************

consensus_2577#0      CCC-GAATCCGTACTACTACACGAACAACGCCCCG------------------------- 814
consensus_2577#1      CCCCGAATCCGTACTACTACACGAACAACGCCCCGCTGAACAGCATTTCGGACGTCGGCA 400
                      *** *******************************                         

consensus_2577#0      ------------------------------------------------------------
consensus_2577#1      AGCAGGTCCCGGTTGGATTCAAATCGAACGGCAAACCGGCACGCATCTACCACTGGAACA 460
                                                                                  

consensus_2577#0      ------------------------------------------------------------
consensus_2577#1      TTCCGGTGCTGAAGAAGATGCTCGGCGCGAAGCAGAGCCGCCATCCGAACTCGCGCCGCC 520
                                                                                  

consensus_2577#0      -----------------------------------
consensus_2577#1      ACGATGACATAGACGAGCTGATCGACATTAAGGAA 555