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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[CCGCCTTACTAGAGATTGGCAAACAAACAGTTAGTGCAAAGGTAGTAGTTAGCGGTGGTATCTTTAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAGTGACTAGTTGCGGAAGGCTTTCTATTTCCTCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAGACGTTCTAATTGGATTACTGTTCAGACGTCATATAGGACTCAATTATTCCTATTAGAAGCGTATTAAATAGCAGAAAAGAAGATTGGATTAGCTCCTACCCAACCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTAGATGTAGCAACCGTAACGAATAATTGCTTCTGTAACCATGCACACACCTTCCCACACATACGGCTACTAACCACTGGCGATTTAATTATTCACAGCAATCACCACCACTCAGCGATGGCTTACC]
[+] EMBL BM647543 [CCGCCTTACTAGAGATTGGCAAACAAACAGTTAGTGCAAAGGTAGTAGTTAGCGGTGGTATCTTTAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAGTGACTAGTTGCGGAAGGCTTTCTATTTCCTCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAGACGTTCTAATTGGATTACTGTTCAGACGTCATATAGGACTCAATTATTCCTATTAGAAGCGTATTAAATAGCAGAAAAGAAGATTGGATTAGCTCCTACCCAACCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTAGATGTAGCAACCGTAACGAATAATTGCTTCTGTAACCATGCACACACCTTCCCACACATACGGCTACTAACCACTGGCGATTTAATTATTCACAGCAATCACCACCACTCAGCGATGGCTTACC]
consensusID : consensus_2583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCAGAGGTAGTAGTTAGCGGTGGTATCTATAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAACAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAATGACTAGTTGCGGAAGGCTTTCTATTTCCCCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAAACGTTCCAATTGCATTACTGTTCAGACGTCATAAACGACTCAATTATTCCTATTAGAATCGTATTAAATAGCAGAAAAGATGATTGGATTAGCTCCTACCCAATCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTACATGTAAC]
[+] EMBL BM637249 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCAGAGGTAGTAGTTAGCGGTGGTATCTATAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAACAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAATGACTAGTTGCGGAAGGCTTTCTATTTCCCCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAAACGTTCCAATTGCATTACTGTTCAGACGTCATAAACGACTCAATTATTCCTATTAGAATCGTATTAAATAGCAGAAAAGATGATTGGATTAGCTCCTACCCAATCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTACATGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2583#0 ----------------------------------------CCGCCTTACTAGAGATTGGC 20
consensus_2583#1 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60
** * * * *
consensus_2583#0 AAACAAACA-GTTAGTGCAAAGGTAGTAGTTAGCGGTGGTATCTTTAACACGATCGCTAG 79
consensus_2583#1 CCGCCCACGCGTCCGTGCAGAGGTAGTAGTTAGCGGTGGTATCTATAACACGATCGCTAG 120
* ** ** ***** ************************ ***************
consensus_2583#0 AAAGGAACGACCGCAATCACCCCGGTAGCAACAACAA--AAAAGTCCAAACTTCCAAGCT 137
consensus_2583#1 AAAGGAACGACCGCAATCACCCCGGTAGCAACAACAACAAAAAGTCCAAACTTCCAAGCT 180
************************************* *********************
consensus_2583#0 TCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGT 197
consensus_2583#1 TCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGT 240
************************************************************
consensus_2583#0 GAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGC 257
consensus_2583#1 GAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGC 300
************************************************************
consensus_2583#0 ACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCT 317
consensus_2583#1 ACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCT 360
************************************************************
consensus_2583#0 CGTTAAGTGACTAGTTGCGGAAGGCTTTCTATTTCCTCGCTCGATCGAGTAGCGTAACTG 377
consensus_2583#1 CGTTAAATGACTAGTTGCGGAAGGCTTTCTATTTCCCCGCTCGATCGAGTAGCGTAACTG 420
****** ***************************** ***********************
consensus_2583#0 TTTCTATTACGATTCTTATAGACGTTCTAATTGGATTACTGTTCAGACGTCATATAGGAC 437
consensus_2583#1 TTTCTATTACGATTCTTATAAACGTTCCAATTGCATTACTGTTCAGACGTCATAAACGAC 480
******************** ****** ***** ******************** * ***
consensus_2583#0 TCAATTATTCCTATTAGAAGCGTATTAAATAGCAGAAAAGAAGATTGGATTAGCTCCTAC 497
consensus_2583#1 TCAATTATTCCTATTAGAATCGTATTAAATAGCAGAAAAGATGATTGGATTAGCTCCTAC 540
******************* ********************* ******************
consensus_2583#0 CCAACCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTC 557
consensus_2583#1 CCAATCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTC 600
**** *******************************************************
consensus_2583#0 ATTAGATGTAGCAACCGTAACGAATAATTGCTTCTGTAACCATGCACACACCTTCCCACA 617
consensus_2583#1 ATTACATGTAAC------------------------------------------------ 612
**** ***** *
consensus_2583#0 CATACGGCTACTAACCACTGGCGATTTAATTATTCACAGCAATCACCACCACTCAGCGAT 677
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 GGCTTACC 685
consensus_2583#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||