cluster # 2594

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Anopheles gambiae
cluster # 2594 cluster # 2594 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2594#0 length = 628 sequences # 1

consensus_2594#1 length = 346 sequences # 1

consensusID : consensus_2594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCGCTCCAAACGTACAGTACATCCAAACGGTAGGCAGACATGAAGGCGTTCATTGTATTCACCATGGCCCTGGCCCTTGCCAGCGCAAAGGCAGTCGAAAACTCCAACAAGGAAAAGCGAGGACTGTGGGATCTGGGATCGGCTCAGCATGAATCGTACGAAAGCTACGGCTATGACCATCAGCAGTCTCATGGATACTACGGCAACGACTACGCCGAGAAGGAGGTGAAACAGGTCATCACCAAGAAGGTCCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCAGTCGAGGTGAAGGTCCCGTACCCCGTTGAGGTTGAGAAGAAGGTCTCGGTCGTCGTTGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGTACCCAGTCCACGTTGATCGTCCATACCCGGTGGAAGTGAAATACCCAGTCCATGTCCCGGTGTACCAGAAGGAGTACGTCGAAGTGCCAAAGCCATACGAAGTTCATGTCGATAAGCCCTACCCGGTGTACGTGAAGGAGCCAGTGTACGTCGAGAAGCCAGTCCCGTTCACTGTCCTCATCAAGAAGGAGCACAAGAAGCCATTCTTCGGCTGAAATCTAAATATATGGTTATTTGTTGAAGATT]

[+] EMBL BM637383             [CCGCTCCAAACGTACAGTACATCCAAACGGTAGGCAGACATGAAGGCGTTCATTGTATTCACCATGGCCCTGGCCCTTGCCAGCGCAAAGGCAGTCGAAAACTCCAACAAGGAAAAGCGAGGACTGTGGGATCTGGGATCGGCTCAGCATGAATCGTACGAAAGCTACGGCTATGACCATCAGCAGTCTCATGGATACTACGGCAACGACTACGCCGAGAAGGAGGTGAAACAGGTCATCACCAAGAAGGTCCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCAGTCGAGGTGAAGGTCCCGTACCCCGTTGAGGTTGAGAAGAAGGTCTCGGTCGTCGTTGAGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGTACCCAGTCCACGTTGATCGTCCATACCCGGTGGAAGTGAAATACCCAGTCCATGTCCCGGTGTACCAGAAGGAGTACGTCGAAGTGCCAAAGCCATACGAAGTTCATGTCGATAAGCCCTACCCGGTGTACGTGAAGGAGCCAGTGTACGTCGAGAAGCCAGTCCCGTTCACTGTCCTCATCAAGAAGGAGCACAAGAAGCCATTCTTCGGCTGAAATCTAAATATATGGTTATTTGTTGAAGATT]




>consensus_2594#0
CCGCTCCAAACGTACAGTACATCCAAACGGTAGGCAGACATGAAGGCGTTCATTGTATTC
ACCATGGCCCTGGCCCTTGCCAGCGCAAAGGCAGTCGAAAACTCCAACAAGGAAAAGCGA
GGACTGTGGGATCTGGGATCGGCTCAGCATGAATCGTACGAAAGCTACGGCTATGACCAT
CAGCAGTCTCATGGATACTACGGCAACGACTACGCCGAGAAGGAGGTGAAACAGGTCATC
ACCAAGAAGGTCCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCAGTCGAGGTG
AAGGTCCCGTACCCCGTTGAGGTTGAGAAGAAGGTCTCGGTCGTCGTTGAGAAGAAGGTC
CCGGTGTACGTGGAGAAGAAGTACCCAGTCCACGTTGATCGTCCATACCCGGTGGAAGTG
AAATACCCAGTCCATGTCCCGGTGTACCAGAAGGAGTACGTCGAAGTGCCAAAGCCATAC
GAAGTTCATGTCGATAAGCCCTACCCGGTGTACGTGAAGGAGCCAGTGTACGTCGAGAAG
CCAGTCCCGTTCACTGTCCTCATCAAGAAGGAGCACAAGAAGCCATTCTTCGGCTGAAAT
CTAAATATATGGTTATTTGTTGAAGATT

consensusID : consensus_2594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CCAGCCAGAATCGGCACGAGGNGTACATCCAAGCGGTAGGCAGACATCAAGGCGTTCATTGTGTTCTCTGTGGTCCTGGCCCTTGCCAGCGCGGGTGCAGTCGACAGCTCCAACAAGGAAAAGCGAGGACTGTGGGAACTGGGATCGGCTCAGCACGATTCGTACGAGAGCTACGGCGTATGACCATCAGCAGGTCCCAGTGGATACTACGGCAACGACTACGTCCAGAAGGAGGTGAAACAGGTCATCACCAAGAAGGTTCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCAGTCGAGGTGAAGGTCCCGGTACCCAGGTTGAGGTCGAGNAAGAAGG]

[+] EMBL BX469302             [CCAGCCAGAATCGGCACGAGGNGTACATCCAAGCGGTAGGCAGACATCAAGGCGTTCATTGTGTTCTCTGTGGTCCTGGCCCTTGCCAGCGCGGGTGCAGTCGACAGCTCCAACAAGGAAAAGCGAGGACTGTGGGAACTGGGATCGGCTCAGCACGATTCGTACGAGAGCTACGGCGTATGACCATCAGCAGGTCCCAGTGGATACTACGGCAACGACTACGTCCAGAAGGAGGTGAAACAGGTCATCACCAAGAAGGTTCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCAGTCGAGGTGAAGGTCCCGGTACCCAGGTTGAGGTCGAGNAAGAAGG]




>consensus_2594#1
CCAGCCAGAATCGGCACGAGGNGTACATCCAAGCGGTAGGCAGACATCAAGGCGTTCATT
GTGTTCTCTGTGGTCCTGGCCCTTGCCAGCGCGGGTGCAGTCGACAGCTCCAACAAGGAA
AAGCGAGGACTGTGGGAACTGGGATCGGCTCAGCACGATTCGTACGAGAGCTACGGCGTA
TGACCATCAGCAGGTCCCAGTGGATACTACGGCAACGACTACGTCCAGAAGGAGGTGAAA
CAGGTCATCACCAAGAAGGTTCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCA
GTCGAGGTGAAGGTCCCGGTACCCAGGTTGAGGTCGAGNAAGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2594#0      ------CCGCTCCAAACGTACAGTACATCCAAACGGTAGGCAGACATGAAGGCGTTCATT 54
consensus_2594#1      CCAGCCAGAATCGGCACGAGGNGTACATCCAAGCGGTAGGCAGACATCAAGGCGTTCATT 60
                                **   ***    ********** ************** ************

consensus_2594#0      GTATTCACCATGGCCCTGGCCCTTGCCAGCGCAAAGGCAGTCGAAAACTCCAACAAGGAA 114
consensus_2594#1      GTGTTCTCTGTGGTCCTGGCCCTTGCCAGCGCGGGTGCAGTCGACAGCTCCAACAAGGAA 120
                      ** *** *  *** ******************    ******** * *************

consensus_2594#0      AAGCGAGGACTGTGGGATCTGGGATCGGCTCAGCATGAATCGTACGAAAGCTACGGC-TA 173
consensus_2594#1      AAGCGAGGACTGTGGGAACTGGGATCGGCTCAGCACGATTCGTACGAGAGCTACGGCGTA 180
                      ***************** ***************** ** ******** ********* **

consensus_2594#0      TGACCATCAGCAG-TCTCA-TGGATACTACGGCAACGACTACGCCGAGAAGGAGGTGAAA 231
consensus_2594#1      TGACCATCAGCAGGTCCCAGTGGATACTACGGCAACGACTACGTCCAGAAGGAGGTGAAA 240
                      ************* ** ** *********************** * **************

consensus_2594#0      CAGGTCATCACCAAGAAGGTCCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCA 291
consensus_2594#1      CAGGTCATCACCAAGAAGGTTCCAGTTCCGTACCCAGTGGAGGTCGAGAAGCACGTTCCA 300
                      ******************** ***************************************

consensus_2594#0      GTCGAGGTGAAGGTCCCG-TACCCCG-TTGAGGTTGAGAAGAAGGTCTCGGTCGTCGTTG 349
consensus_2594#1      GTCGAGGTGAAGGTCCCGGTACCCAGGTTGAGGTCGAGNAAGAAGG-------------- 346
                      ****************** ***** * ******* *** *  * *               

consensus_2594#0      AGAAGAAGGTCCCGGTGTACGTGGAGAAGAAGTACCCAGTCCACGTTGATCGTCCATACC 409
consensus_2594#1      ------------------------------------------------------------
                                                                                  

consensus_2594#0      CGGTGGAAGTGAAATACCCAGTCCATGTCCCGGTGTACCAGAAGGAGTACGTCGAAGTGC 469
consensus_2594#1      ------------------------------------------------------------
                                                                                  

consensus_2594#0      CAAAGCCATACGAAGTTCATGTCGATAAGCCCTACCCGGTGTACGTGAAGGAGCCAGTGT 529
consensus_2594#1      ------------------------------------------------------------
                                                                                  

consensus_2594#0      ACGTCGAGAAGCCAGTCCCGTTCACTGTCCTCATCAAGAAGGAGCACAAGAAGCCATTCT 589
consensus_2594#1      ------------------------------------------------------------
                                                                                  

consensus_2594#0      TCGGCTGAAATCTAAATATATGGTTATTTGTTGAAGATT 628
consensus_2594#1      ---------------------------------------