cluster # 2615

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Anopheles gambiae
cluster # 2615 cluster # 2615 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2615#0 length = 622 sequences # 1

consensus_2615#1 length = 593 sequences # 1

consensusID : consensus_2615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACACCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAGCATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGGCTCTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAACACATTCTTACTACGTTAAGGTTATAAAGTTAAAAACACCACAAATACAGCGAAACGTAACCGAAAAACGGCCATAGAGAAAGGCACCCAATGATGGGGAGCAGGAGGGGCAGAAAACACTGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGCATGAGTGTAACGTATGTATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTTAGTANAACCTACNCTANATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACACGAAAACAACNCTAAGCAAGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAANAACCNGGGCATGTTGNCGGTCGCCNGCTTCATTCCCTT]

[+] EMBL AL934599             [ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACACCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAGCATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGGCTCTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAACACATTCTTACTACGTTAAGGTTATAAAGTTAAAAACACCACAAATACAGCGAAACGTAACCGAAAAACGGCCATAGAGAAAGGCACCCAATGATGGGGAGCAGGAGGGGCAGAAAACACTGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGCATGAGTGTAACGTATGTATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTTAGTANAACCTACNCTANATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACACGAAAACAACNCTAAGCAAGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAANAACCNGGGCATGTTGNCGGTCGCCNGCTTCATTCCCTT]




>consensus_2615#0
ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACA
CCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAG
CATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGGCT
CTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAACACATTCTTACTACGT
TAAGGTTATAAAGTTAAAAACACCACAAATACAGCGAAACGTAACCGAAAAACGGCCATA
GAGAAAGGCACCCAATGATGGGGAGCAGGAGGGGCAGAAAACACTGGGGCATTCAGCTTA
AGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGCATGAGTGTAACGTATGT
ATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTTAGTANAACCTACNCTAN
ATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACACGAAAACAACNCTAAGCA
AGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAANAACCNGGGCATGTTGN
CGGTCGCCNGCTTCATTCCCTT

consensusID : consensus_2615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TATCGTGTACACACCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTGTGTGTAATGTGAGCATGTGAGTTAAAGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGCGTGCATGTGCATGGGTTCTTCCTTACCTAACCCCCTTTCCGGTAAAACTTGTTAAAAACATTCTTACTACTTAAGTTATAAAGTTAAAAACACCACGAAAATACACGAAACTAACCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCGAATAATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAAACACGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCTGCTGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAGAAGAAAGGCGTAACTTTATAAACTAACTAATGTAAAAAGGGGAAAAGGGGAAGCGAACAGCTCTATACAAAACAAATAAGAAGTAAACACAAAGCAAAAACCAAACAATTGTGACACCATTTCTATTATTCACA]

[+] EMBL BX627799             [TATCGTGTACACACCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTGTGTGTAATGTGAGCATGTGAGTTAAAGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGCGTGCATGTGCATGGGTTCTTCCTTACCTAACCCCCTTTCCGGTAAAACTTGTTAAAAACATTCTTACTACTTAAGTTATAAAGTTAAAAACACCACGAAAATACACGAAACTAACCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCGAATAATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAAACACGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCTGCTGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAGAAGAAAGGCGTAACTTTATAAACTAACTAATGTAAAAAGGGGAAAAGGGGAAGCGAACAGCTCTATACAAAACAAATAAGAAGTAAACACAAAGCAAAAACCAAACAATTGTGACACCATTTCTATTATTCACA]




>consensus_2615#1
TATCGTGTACACACCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTG
TGTGTAATGTGAGCATGTGAGTTAAAGAAGCGATTTGTGTACATACAATATGTGCGAAGG
AGGCCATGCGTGCATGTGCATGGGTTCTTCCTTACCTAACCCCCTTTCCGGTAAAACTTG
TTAAAAACATTCTTACTACTTAAGTTATAAAGTTAAAAACACCACGAAAATACACGAAAC
TAACCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCG
AATAATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAA
ACACGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCT
GCTGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAGAAGAAAGGCGTAACTTTATAA
ACTAACTAATGTAAAAAGGGGAAAAGGGGAAGCGAACAGCTCTATACAAAACAAATAAGA
AGTAAACACAAAGCAAAAACCAAACAATTGTGACACCATTTCTATTATTCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2615#0      ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACA 60
consensus_2615#1      -----------------------------------------------TATCGTGTACACA 13
                                                                     *************

consensus_2615#0      CCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAG 120
consensus_2615#1      CCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTGTGTGTAATGTGAG 73
                      **************** ****************** *** ********************

consensus_2615#0      CATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATG--- 177
consensus_2615#1      CATGTGAGTTAAA--GAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGCGT 131
                      ********** **  ******************************************   

consensus_2615#0      ------------GCTCTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAAC 225
consensus_2615#1      GCATGTGCATGGGTTCTTCCTTACC-TAACCCCC---TTTCCGGTAAAACTTGTTAAAA- 186
                                  * ***** ***** ********   ****************** *** 

consensus_2615#0      ACATTCTTACTACGTTAAGGTTATAAAGTTAAAAACACCACAAATACA-GCGAAACGTAA 284
consensus_2615#1      ACATTCTTACTACTT--AAGTTATAAAGTTAAAAACACCACGAAAATACACGAAAC-TAA 243
                      ************* *  * ********************** ** * *  ****** ***

consensus_2615#0      CCGAAAAACGGCC-ATAGAGAAAGGCACCCAATGATG----------------------- 320
consensus_2615#1      CCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCGAAT 303
                      ************* ***** ***** ***********                       

consensus_2615#0      -----------------------GGG-------AGCAGGA-------GGGGCAGAAAACA 343
consensus_2615#1      AATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAAACA 363
                                             ***        *  **        **** ********

consensus_2615#0      CTGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGC 403
consensus_2615#1      C-GGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCTGC 422
                      * ****************************************** ***************

consensus_2615#0      ATGAGTGTAACGTATGTATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTT 463
consensus_2615#1      -TGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAG-AAGAA-AGGCGTAACTTT--- 476
                       ********************************* *** ***** *********  *   

consensus_2615#0      AGTANAACCTACNCTANATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACAC 523
consensus_2615#1      ---ATAAACTAACTAATGT-----AAAAAGGGGAAAAGGGGAAGCGAAC-AGCTCTATAC 527
                         * ** ***    *  *     * *  *** * ********** *** **** ** **

consensus_2615#0      GAAAACAACNCTAAGCAAGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAA 583
consensus_2615#1      -AAAACAAAT---AAGAAGTAAACACAAA-GCAAAA-ACCAAACAATTGTGACACCATTT 581
                       *******     *  ************* *** ** ** * *  *     * * **   

consensus_2615#0      NAACCNGGGCATGTTGNCGGTCGCCNGCTTCATTCCCTT 622
consensus_2615#1      CTATTATT-CACA-------------------------- 593
                        *      **