These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [GGCCAGAATCCGCACGAGTGCGTGATTCCCGCTGGATGAGCTGCTAAACACTTCATTCGACGATTCGGCATCGGTTGCTATGACGGATGGGGAGCATGAGCTGCAGCAGCACCAGGGCCTCCTGTTCGGTAGGGATTCGTCGCCCACGGTCGAACTGCAGCACACGAAGGAGCAACTAAGCAAGCAGGAAAGCAGGGGTACGCCATTTGACCGCGGTGCTGGCGGAAGCGGAACAGGATCTCGCCAAGCTAACACAGCTGAACGAGCTGCTGAAGGAGGAGGTCCGGCGGCAGCAGCGCTCGATCGAGCGGGAGGCGCATGTACACAATTCGGAGTATTTGAAAAATGTGATATTCAAGTTTGTAACATTAAGCAATGGAGACGAACGGTCTAGGCTGGTGCCGGTTCTAAACACGATACTTAAGCTTAGCCCCGAGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTNTGTGTGGAGTTAAAAGTGCATCGAATATTATGCCCCCATCTGGTTTCCCATTCCCTGGGTATTATAGTAGAAGAGTGTTAAAGCCGTTTATCCCGGTACTTGTTCAGATCGNTTCCTAACGGGCAGTTTGGTTACCCCTTAATTACCGCCACNCACGATTGGCCAAATCGGATTGGAAGGCCATTTTGGCTTTCGNATTGACCCGGGTTCCNAGATTTTGGTAAGGTTTAAAGGGTTGGACAAGGAAGCTTGAAT] [+] EMBL BX467447 [GGCCAGAATCCGCACGAGTGCGTGATTCCCGCTGGATGAGCTGCTAAACACTTCATTCGACGATTCGGCATCGGTTGCTATGACGGATGGGGAGCATGAGCTGCAGCAGCACCAGGGCCTCCTGTTCGGTAGGGATTCGTCGCCCACGGTCGAACTGCAGCACACGAAGGAGCAACTAAGCAAGCAGGAAAGCAGGGGTACGCCATTTGACCGCGGTGCTGGCGGAAGCGGAACAGGATCTCGCCAAGCTAACACAGCTGAACGAGCTGCTGAAGGAGGAGGTCCGGCGGCAGCAGCGCTCGATCGAGCGGGAGGCGCATGTACACAATTCGGAGTATTTGAAAAATGTGATATTCAAGTTTGTAACATTAAGCAATGGAGACGAACGGTCTAGGCTGGTGCCGGTTCTAAACACGATACTTAAGCTTAGCCCCGAGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTNTGTGTGGAGTTAAAAGTGCATCGAATATTATGCCCCCATCTGGTTTCCCATTCCCTGGGTATTATAGTAGAAGAGTGTTAAAGCCGTTTATCCCGGTACTTGTTCAGATCGNTTCCTAACGGGCAGTTTGGTTACCCCTTAATTACCGCCACNCACGATTGGCCAAATCGGATTGGAAGGCCATTTTGGCTTTCGNATTGACCCGGGTTCCNAGATTTTGGTAAGGTTTAAAGGGTTGGACAAGGAAGCTTGAAT] consensusID : consensus_263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTTGTTGTGGAGTTAAAAGTGCATCGAATACTATGCCCCCATCTGGTTCCATTCCTGGTTTTATAGTAGAAGAGTGTTAAACCTTTATCCCGTACTTGTTAGATAGTTCCTACGGCAGTTTGTACCCCTATCCCCCCCACTGCCAAATCGATTGAAGCATTTTGCCTTTCGATTATCCCGTCCGAATTTGGTAAGGTTTAAAGGGTGGAAAGAAACTGATTGCAATTTTAATCCTATATTATCACTCTTTATCGGCAATTGCACTGAACTCTAGAGCGCGTTTAGGAAGGAGCGATTATAATGTGTTATTAATATGGTTTTAATTAATTATTGCAACTTACTACCTACGAACTACATTTCTCTGCATGCCGTAATATACCCAGAGTATCCCGAATCGATTCCAATTTCTATAAATGCATTGTGTCCTTGGTAAAATTATGAGTTAACATTTATTGTACTGTACGAATTTGGTTGTTAGCTCTTTACTATAGCTAGCTTTTGCACTCTGTTTGAAATAAAGGGCAGTTTAGGTAGAACATTTTCTTGAAGGTGCAATA] [+] EMBL BM590028 [CCGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTTGTTGTGGAGTTAAAAGTGCATCGAATACTATGCCCCCATCTGGTTCCATTCCTGGTTTTATAGTAGAAGAGTGTTAAACCTTTATCCCGTACTTGTTAGATAGTTCCTACGGCAGTTTGTACCCCTATCCCCCCCACTGCCAAATCGATTGAAGCATTTTGCCTTTCGATTATCCCGTCCGAATTTGGTAAGGTTTAAAGGGTGGAAAGAAACTGATTGCAATTTTAATCCTATATTATCACTCTTTATCGGCAATTGCACTGAACTCTAGAGCGCGTTTAGGAAGGAGCGATTATAATGTGTTATTAATATGGTTTTAATTAATTATTGCAACTTACTACCTACGAACTACATTTCTCTGCATGCCGTAATATACCCAGAGTATCCCGAATCGATTCCAATTTCTATAAATGCATTGTGTCCTTGGTAAAATTATGAGTTAACATTTATTGTACTGTACGAATTTGGTTGTTAGCTCTTTACTATAGCTAGCTTTTGCACTCTGTTTGAAATAAAGGGCAGTTTAGGTAGAACATTTTCTTGAAGGTGCAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_263#0 GGCCAGAATCCGCACGAGTGCGTGATTCCCGCTGGATGAGCTGCTAAACACTTCATTCGA 60 consensus_263#1 ------------------------------------------------------------ consensus_263#0 CGATTCGGCATCGGTTGCTATGACGGATGGGGAGCATGAGCTGCAGCAGCACCAGGGCCT 120 consensus_263#1 ----------------------------------CCGGAGACACAAAAATTGCAGAACGT 26 * *** ** * *** * * consensus_263#0 CCTGTTCGGTAGGGATTC-GTCGCCCACGGTCGAACTGCAGCACACGAAGGAGCAACTAA 179 consensus_263#1 TGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGG--GTTTGTTGTGGAGTTAA-AA 83 *** *** * **** ** * ** * * **** * ** consensus_263#0 GCAAGCAGGAAAGCAGGGGTACGCCATTTGACCGCGGTGCTGGCGGAAGCGGAACAGGAT 239 consensus_263#1 GTGCATCGAATACTATGC---CCCCATCTGGTTCCATTCCTGGTTTTATAGTAGAAGAGT 140 * * * * * * * **** ** * * **** * * * ** * consensus_263#0 CTCGCCAAGCTAACACAGCTGAACGAGCTGCTGAAGGAGGAGGTCCGGCGGCAGCAGCGC 299 consensus_263#1 ---GTTAAACCTTTATC-CCGTACTTGTTAGATAGTTCCTACGGCAGTTTGTACCCCTAT 196 * ** * * * * ** * * * * * * * * * * consensus_263#0 TCGATCGAGCGGGAGGCGCATGTACACAATTCGGAGTATTTGAAAAATGTGATATTCAAG 359 consensus_263#1 CCCCCCCACTGCCAAATCGATTGAAGCATTTTG---CCTTTCGATTATCCCGT-CCGAAT 252 * * * * * ** * ** ** * *** * ** * ** consensus_263#0 TTTGTAACATT-AAGCAATGGAGACGAACGGTCTAGGCTGGTGCCGGTTCTAAACACGAT 418 consensus_263#1 TTGGTAAGGTTTAAAGGGTGGAAAGAAACTGATTG---CAATTTTAATCCTATAT-TATC 308 ** **** ** ** **** * *** * * * * *** * consensus_263#0 ACTTAAGCTTAGCCCCGAGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCC 478 consensus_263#1 ACTC---TTTATCGGCAATTGCAC-TGAACTCTAGAGCGCGTTTAGGAAGGAGC-GATTA 363 *** *** * * * ** ** * ** **** **** * *** consensus_263#0 TAGTGCCCGTGGATGGACGGGTTNTGTGTGGAGTTAAAAGTGCATCGAATATTATGCCCC 538 consensus_263#1 TAATGT--GTTATTAATATGGTTTTA-----ATTAATTATTGCAACT--TACTAC-CTAC 413 ** ** ** * **** * * * * * **** * ** ** * * consensus_263#0 CATCTGGTTTCCCATTCCCTGGGTATTATAGTAGAAGAGTGTTAAAGCCGTTT--ATCCC 596 consensus_263#1 GAACTACATTTCTCTGCATGCCGTAATATACCCAGAGTATCCCGAATCGATTCCAATTTC 473 * ** ** * * * *** **** ** * ** * ** ** * consensus_263#0 GGTACTTGTTCAGATCGNTTCCTAACGGGCAGTTTGGTTACCCCTTAATTACCGCCACNC 656 consensus_263#1 TATAAATGC----ATTGTGTCCTTGGTAAAATTATGAGTTAACATTTATTGT-ACTGTAC 528 ** ** ** * **** * * ** * * ** *** * * consensus_263#0 ACGATTGGCCAAATCGGATTGGAAGGCCATTTTGGCTTTCGNATTGACCCGGGTTCCNAG 716 consensus_263#1 GAATTTGGTTG--TTAGCTCTTTACTATAGCT-AGCTTTTGCACTCTGTTTGAAATAAAG 585 **** * * * * * * ***** * * * * ** consensus_263#0 ATTTTGGTAAGGTTTAAAGGGTTGGACAAGGAAGCTTGAAT 757 consensus_263#1 GGC--AGTTTAGGTAGAACATTTTCTTGAAGGTGCAATA-- 622 ** * * ** ** * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||