cluster # 2666

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Anopheles gambiae
cluster # 2666 cluster # 2666 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2666#0 length = 593 sequences # 1

consensus_2666#1 length = 483 sequences # 1

consensusID : consensus_2666#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATAAATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCTCCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTCTTTCCGTTTTCCGATTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTTCCAATCACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCATGGAATCTGGCAAATGAATCTAAAATTTCAGCCTTCTCCATCAACGGTTCTCCACAGAGTTAC]

[+] EMBL BX617208             [GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATAAATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCTCCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTCTTTCCGTTTTCCGATTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTTCCAATCACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCATGGAATCTGGCAAATGAATCTAAAATTTCAGCCTTCTCCATCAACGGTTCTCCACAGAGTTAC]




>consensus_2666#0
GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATA
AATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCT
CCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTAT
CTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGTTTTGCTA
TACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTCTTTCCGTTTTCCGA
TTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTTCCAATCACT
CTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTC
TCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTTACGTTTTAT
AATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCATGGAATCTGG
CAAATGAATCTAAAATTTCAGCCTTCTCCATCAACGGTTCTCCACAGAGTTAC

consensusID : consensus_2666#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [ATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTTCCGATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTCTTCCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCATGATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCAACACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAGATTT]

[-] EMBL BM590487             [ATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTGCTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTTCCGATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTCTTCCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCCACCGTTACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCATGATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCAACACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAGATTT]




>consensus_2666#1
ATCTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTG
CTATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTT
CCGATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTC
TTCCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGC
TGTGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCCACCGTTA
CGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCATG
ATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCAA
CACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAGA
TTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2666#0      GGAAGAGCTAGATGGACTGCATACAAAGATAGCCTAAAAGAGCGATAAGAACGTAAGATA 60
consensus_2666#1      ------------------------------------------------------------
                                                                                  

consensus_2666#0      AATGATCACTTTAAATTTAATACTTTTTAATTCAACTTCCCACTTCTCACCCCCCCCCCT 120
consensus_2666#1      ------------------------------------------------------------
                                                                                  

consensus_2666#0      CCCCTCTCCTTCATTACTGCCTAATGCAGGTGTTACTTACGAATGTTTTTGTTTGTTTAT 180
consensus_2666#1      ----------------------------------------------------------AT 2
                                                                                **

consensus_2666#0      CTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTG-TTTTGCT 239
consensus_2666#1      CTCTTTATGTTTTGCTCATGTTATGTATAAAGAGTGTGCGTGTGTGCTTTTGGTTTTGCT 62
                      **************************************************** *******

consensus_2666#0      ATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTT-CTTTCCGTTTTCC 298
consensus_2666#1      ATACTATTTATCCCCAACAAGAGCCTGATTTGATTTTAAAACGTTTTCTTTCTGTTTTCC 122
                      ********************************************** ***** *******

consensus_2666#0      GATTTCCACCTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATTTGTTTTTT------- 351
consensus_2666#1      GATTTCCACTTCTACTGCTTACGTCCCTTTTTAAAATGTAGGATATGTTTTTTTCTTCTT 182
                      ********* ********************************** ********       

consensus_2666#0      CCAATCACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTG 411
consensus_2666#1      CCAAACACTCTGGGAACATTTTTTGTGTATAATGTTTTAACTTTATCCAACATCGTGCTG 242
                      **** *******************************************************

consensus_2666#0      TGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGATCATCCACCGTT 471
consensus_2666#1      TGTTCTCTCTCTCTCCAGACGAATGGCACGGAGAGGATGGGGAGAGGA---TCCACCGTT 299
                      ************************************************   *********

consensus_2666#0      ACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGAAAGGGAAGGGGCAT 531
consensus_2666#1      ACGTTTTATAATGAACTCTCCCAGATCACAGGGTAAACGAGAAGGGACGGGAAGGGGCAT 359
                      ********************************************* * ************

consensus_2666#0      G---GAATCTGGCAAATGAATCTAAAATTTCAGCCTTCTCCAT-CAACGGTTCTCCA--- 584
consensus_2666#1      GATGGAATCTGGCAAATGAATGTAAAATTCCAGCCACACTGATTCAACGGTTCTCCATCA 419
                      *   ***************** ******* *****      ** *************   

consensus_2666#0      ---CAGAGTTAC------------------------------------------------ 593
consensus_2666#1      ACACAGAGTTACAGAAACACACACACAGACACAGTAAGATGTAATAAAAACGGAAATTAG 479
                         *********                                                

consensus_2666#0      ----
consensus_2666#1      ATTT 483