cluster # 2678

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Anopheles gambiae
cluster # 2678 cluster # 2678 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2678#0 length = 661 sequences # 1

consensus_2678#1 length = 373 sequences # 1

consensusID : consensus_2678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CTCAACCCACTTTTAACCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAATAAGTTTACCCTAATGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCCTTTCCGTTTCCTTTCCGTTGTTTTATTTGTAACCTCCCCCCTCCCCCTGGTAGTGATGCGAAGCGGCATTAGCTGTAGGATAAGTTTTACGAGCGCGTTACTGTCGTTGCCACCAAATTTTGGCTCTAAGGCATCAATTTTTGACAGTGCGCATGAATTTTTGCCTCTAAGGCATCAATTTTTGACTCTAACGCACCTATTTTTGTCTGTAAGTCATCAATTTTTGACTCTTGTAGGAATAATGACAATTTTACAAGGTATTTAAGCAGATTTTTAACAATTGTTATTCCACAACTCATAAAAAATACAAAAACTGTGTAAATTGATTGTTTCTTGAGAAAAAATGATGAAATTTTAGATTTTCTAAAGCTTTTGTTTACAGCTGAAAATACGTGCCAATTTTTTTCACTCCATTGAAACTGCCAAAATTGGCAAAACAATTGTTGTATTTTAAATTGTATCAATAAAATTATTCACTATTTAACTTAATTTCAATCATTTCAGAACACACAGTTTCAGAAATTAC]

[+] EMBL BX616769             [CTCAACCCACTTTTAACCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAATAAGTTTACCCTAATGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCCTTTCCGTTTCCTTTCCGTTGTTTTATTTGTAACCTCCCCCCTCCCCCTGGTAGTGATGCGAAGCGGCATTAGCTGTAGGATAAGTTTTACGAGCGCGTTACTGTCGTTGCCACCAAATTTTGGCTCTAAGGCATCAATTTTTGACAGTGCGCATGAATTTTTGCCTCTAAGGCATCAATTTTTGACTCTAACGCACCTATTTTTGTCTGTAAGTCATCAATTTTTGACTCTTGTAGGAATAATGACAATTTTACAAGGTATTTAAGCAGATTTTTAACAATTGTTATTCCACAACTCATAAAAAATACAAAAACTGTGTAAATTGATTGTTTCTTGAGAAAAAATGATGAAATTTTAGATTTTCTAAAGCTTTTGTTTACAGCTGAAAATACGTGCCAATTTTTTTCACTCCATTGAAACTGCCAAAATTGGCAAAACAATTGTTGTATTTTAAATTGTATCAATAAAATTATTCACTATTTAACTTAATTTCAATCATTTCAGAACACACAGTTTCAGAAATTAC]




>consensus_2678#0
CTCAACCCACTTTTAACCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAA
ATAAGTTTACCCTAATGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGT
AGCGTTTCCGTTTCCTTTCCGTTTCCTTTCCGTTGTTTTATTTGTAACCTCCCCCCTCCC
CCTGGTAGTGATGCGAAGCGGCATTAGCTGTAGGATAAGTTTTACGAGCGCGTTACTGTC
GTTGCCACCAAATTTTGGCTCTAAGGCATCAATTTTTGACAGTGCGCATGAATTTTTGCC
TCTAAGGCATCAATTTTTGACTCTAACGCACCTATTTTTGTCTGTAAGTCATCAATTTTT
GACTCTTGTAGGAATAATGACAATTTTACAAGGTATTTAAGCAGATTTTTAACAATTGTT
ATTCCACAACTCATAAAAAATACAAAAACTGTGTAAATTGATTGTTTCTTGAGAAAAAAT
GATGAAATTTTAGATTTTCTAAAGCTTTTGTTTACAGCTGAAAATACGTGCCAATTTTTT
TCACTCCATTGAAACTGCCAAAATTGGCAAAACAATTGTTGTATTTTAAATTGTATCAAT
AAAATTATTCACTATTTAACTTAATTTCAATCATTTCAGAACACACAGTTTCAGAAATTA
C

consensusID : consensus_2678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [TTACATTACGCAGACAACAACAAAAAAACAGCATGGCAGACGATTGGAATTTTTAGCAGTAGAAGTTTAGCTGTACAGTGCTTTCACGCCCGTGGAAACATTCATTAACACTGGCGCAATATGGAGCGTCTTTGCAAATGAAGTTTTCTGTTTTTGCATCCCAACTCAACCCACTTTTAACCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAAATAAGTTTACCCTAATGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCCTTTCCGTTTCCTTTCCGGTGTTTTATTTGTAACCTCCCCCCTCCCCCTCCCAATTTGTCTAGGGATCCTTGCT]

[+] EMBL BM591747             [TTACATTACGCAGACAACAACAAAAAAACAGCATGGCAGACGATTGGAATTTTTAGCAGTAGAAGTTTAGCTGTACAGTGCTTTCACGCCCGTGGAAACATTCATTAACACTGGCGCAATATGGAGCGTCTTTGCAAATGAAGTTTTCTGTTTTTGCATCCCAACTCAACCCACTTTTAACCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAAATAAGTTTACCCTAATGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCCTTTCCGTTTCCTTTCCGGTGTTTTATTTGTAACCTCCCCCCTCCCCCTCCCAATTTGTCTAGGGATCCTTGCT]




>consensus_2678#1
TTACATTACGCAGACAACAACAAAAAAACAGCATGGCAGACGATTGGAATTTTTAGCAGT
AGAAGTTTAGCTGTACAGTGCTTTCACGCCCGTGGAAACATTCATTAACACTGGCGCAAT
ATGGAGCGTCTTTGCAAATGAAGTTTTCTGTTTTTGCATCCCAACTCAACCCACTTTTAA
CCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAAATAAGTTTACCCTAA
TGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCC
TTTCCGTTTCCTTTCCGGTGTTTTATTTGTAACCTCCCCCCTCCCCCTCCCAATTTGTCT
AGGGATCCTTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2678#0      ------------------------------------------------------------
consensus_2678#1      TTACATTACGCAGACAACAACAAAAAAACAGCATGGCAGACGATTGGAATTTTTAGCAGT 60
                                                                                  

consensus_2678#0      ------------------------------------------------------------
consensus_2678#1      AGAAGTTTAGCTGTACAGTGCTTTCACGCCCGTGGAAACATTCATTAACACTGGCGCAAT 120
                                                                                  

consensus_2678#0      --------------------------------------------CTCAACCCACTTTTAA 16
consensus_2678#1      ATGGAGCGTCTTTGCAAATGAAGTTTTCTGTTTTTGCATCCCAACTCAACCCACTTTTAA 180
                                                                  ****************

consensus_2678#0      CCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAA-TAAGTTTACCCTAA 75
consensus_2678#1      CCGATCGATCATGAACATCTGGTGAAGGGCTTTATTTTTTTAAAAATAAGTTTACCCTAA 240
                      ********************************************* **************

consensus_2678#0      TGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCC 135
consensus_2678#1      TGGAACTCTCTTTCTATTTTGCAATTGTGTTAACAAGCAGTTCGTAGCGTTTCCGTTTCC 300
                      ************************************************************

consensus_2678#0      TTTCCGTTTCCTTTCCGTTGTTTTATTTGTAACCTCCCCCCTCCCCCTGGTAGTGATGCG 195
consensus_2678#1      TTTCCGTTTCCTTTCCGGTGTTTTATTTGTAACCTCCCCCCTCCCCCTCCCAATT-TGTC 359
                      ***************** ******************************   * *  **  

consensus_2678#0      AAGCGGCATTAGCTGTAGGATAAGTTTTACGAGCGCGTTACTGTCGTTGCCACCAAATTT 255
consensus_2678#1      TAGGGATCCTTGCT---------------------------------------------- 373
                       ** *    * ***                                              

consensus_2678#0      TGGCTCTAAGGCATCAATTTTTGACAGTGCGCATGAATTTTTGCCTCTAAGGCATCAATT 315
consensus_2678#1      ------------------------------------------------------------
                                                                                  

consensus_2678#0      TTTGACTCTAACGCACCTATTTTTGTCTGTAAGTCATCAATTTTTGACTCTTGTAGGAAT 375
consensus_2678#1      ------------------------------------------------------------
                                                                                  

consensus_2678#0      AATGACAATTTTACAAGGTATTTAAGCAGATTTTTAACAATTGTTATTCCACAACTCATA 435
consensus_2678#1      ------------------------------------------------------------
                                                                                  

consensus_2678#0      AAAAATACAAAAACTGTGTAAATTGATTGTTTCTTGAGAAAAAATGATGAAATTTTAGAT 495
consensus_2678#1      ------------------------------------------------------------
                                                                                  

consensus_2678#0      TTTCTAAAGCTTTTGTTTACAGCTGAAAATACGTGCCAATTTTTTTCACTCCATTGAAAC 555
consensus_2678#1      ------------------------------------------------------------
                                                                                  

consensus_2678#0      TGCCAAAATTGGCAAAACAATTGTTGTATTTTAAATTGTATCAATAAAATTATTCACTAT 615
consensus_2678#1      ------------------------------------------------------------
                                                                                  

consensus_2678#0      TTAACTTAATTTCAATCATTTCAGAACACACAGTTTCAGAAATTAC 661
consensus_2678#1      ----------------------------------------------