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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCAAACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGATTCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCACGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAGTGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACTACGATCGTACNATAACTA]
[+] EMBL BX621696 [TCATTCAATTTAACACAACAAAAACGATTCGATAGAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGCAATGAGCAGAGAATGGGGGATTTTATCAAACGCAGCTTTGAAATCGGTATACACAGCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTACTGAGGAAACAAATTCCATAAGATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTTCACCATTTCCATTAGAGGTAAACGAATAACAGATTCAAAGACTTTGCTGAACGCCGATAAAATAGATATGCCACGATAATTAGAGATACAACCACGATCACCCTTTTTAAAAACTGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATTAAAAAGGAAAGAAACAGGAAGGGCTAGTGCTTCACGACAGTGAAAGAGTAAAGCAGCAGGAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAGAAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGATGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACTACGATCGTACNATAACTA]
consensusID : consensus_2711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence
[GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAATTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCTGAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCTTTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCTGAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTTTTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTAGCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACGAATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT]
[-] EMBL BX627796 [GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAATTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCTGAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCTTTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCTGAATCTTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGGTTTTGACGAGCTAAAGACAACGGTAACGTCTGCTAAAAAGTGAACTCTGCGACCCGAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGGAAGTTTCGGGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCCTGACCTTAGCGACATCTTCGAGTTCTTTGGCATCCGACTCGAACAAATCTTCATAACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAGTAAACTCGGTCATGTTCATTGCCACGAATCGTTCCGTATTATTTGTACCCGTTGATGTTTCTGATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTCTTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2711#0 ------------------------------------------------------------
consensus_2711#1 GCATCCAGTAAGATTTGAACCGTTCTGGTAATTTGATAACTCTTCGACTTCTTTCCAAAA 60
consensus_2711#0 --------------------------TCATTCAATTTAACACAACAAAAACGATTCGATA 34
consensus_2711#1 TTGATGATTGCTGCTCTTGCTGTTGAACAACTGGTTCTTTGCAGTGTAATGGGCGCATCT 120
** ** ** ** * *
consensus_2711#0 GAAATGATTGTAGCCATTCAAGAAAGAAAGGAGAGAAGCCAAGTTTCTTGAATTTAGC-- 92
consensus_2711#1 GAAGTTTCGGCATCAATGCGAGAGAGTAGTCTGGCTCGTATGTCTGCGTAGGTTTGACCT 180
*** * * * * ** * *** ** * * * * * * *** *
consensus_2711#0 ---AATGAGCAGAGAATGGGGGATTTTATCAAACG--CAGCTTTGAAATCGGTATACACA 147
consensus_2711#1 TTTAATCCACAAATAAATACTAAACACTTGAAATGGTCAGCCTTCATGTTGTGGAATTCT 240
*** ** * ** * * *** * **** ** * * * * *
consensus_2711#0 GCATCAACCTGCATGCCAGAGTCCAGATTTAAGAGTA-CTGAGGAAACAAATTCCATAAG 206
consensus_2711#1 GAATC--TTCACAAGCCCGGTTCACTTTCGCCGCGTAACTAATAATGTCATCTGCTTCGG 298
* *** ** *** * ** * * *** ** * * * * * * *
consensus_2711#0 ATTAGTAGTGGTGGAGCGGCCAGCCATAAAGCCATGTTGATTTGGAATGATCCACGATTT 266
consensus_2711#1 TTTTGACGAGCTAAA---GACAACGGTAACGTC-TGCTAAAAAGTGA-ACTCTGCGACCC 353
** * * * * * * ** * *** * * ** * * * * ** ***
consensus_2711#0 CACCATTTCCATTAGAGGTAAACGAATAAC----AGATTCAAAGACTTTGCTGAACGCCG 322
consensus_2711#1 GAAAATTTTCGATAATGTTTGCACAGTTTCCTTGAAAGTTAGCTCCTTCGG-AAGTTTCG 412
* **** * ** * * * * * * * * * *** * * **
consensus_2711#0 ATAAAATAGATATGCCACGATAATTAGAGATACAACCA--CGATCACCCTTTTTAAAAAC 380
consensus_2711#1 GGAGGATGTAATTGGTGTACTGGTTGTGTGCTTGTGCATCCAACTTCCTCAGTAAAAGCC 472
* ** * ** * ** ** * * ** * *** *
consensus_2711#0 TGGCCTTATCCATGCTTGTTTCCAAATATTCGGAAAAGTAGCCGTAGACAAAGAAAGATT 440
consensus_2711#1 TGACCTTAGCGACA----TCTTCGAGTTCTTTGGCATCCGACT-CGAACAAATCTTCATA 527
** ***** * * * * * * * * * * * ***** **
consensus_2711#0 AAAAAGGAAAGAAACAGGAAGGGCTAGTGC-TTCACGACAGTGAAAGAGTAAAGCAGCAG 499
consensus_2711#1 ACGTCGAAACCATTTTTGAAAAGTTCCTCCGTTCTCTGGATCGAAAG--TAAACTCGGTC 585
* * ** * *** * * * * *** * * ***** **** *
consensus_2711#0 GAATACCATCGGGACCCGGCACTGAGGATGGTTTAAGGTTACCTAACGCACGTAAAACAG 559
consensus_2711#1 ATGT-TCATTGCCACGAATCGTTCCGTATTATTTG----TACCCGTTG---ATGTTTCTG 637
* *** * ** * * * ** *** **** * * * *
consensus_2711#0 AAGCTCTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTC 619
consensus_2711#1 ATAGCTTCTGCAGAGCCTTCAAAATCTCTAATTGAATGTTCTGATTTTCGAGAGACATTC 697
* ******************************************************
consensus_2711#0 TTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACTACGA 679
consensus_2711#1 TTGCTTTTAGTTCAACTATCCTCGTCGCCAATTGTTATATACTTAGTTGCCAGACT---- 753
********************************************************
consensus_2711#0 TGTGTTCAGATTAATAGCTTTATTCCAACTGACTATTCTATAAGGGTATACATGTATACT 739
consensus_2711#1 ------------------------------------------------------------
consensus_2711#0 ACGATCGTACNATAACTA 757
consensus_2711#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||