cluster # 2712

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Anopheles gambiae
cluster # 2712 cluster # 2712 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2712#0 length = 691 sequences # 1

consensus_2712#1 length = 543 sequences # 1

consensusID : consensus_2712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCAACTATTCGCCGATGCGACTGTTTGTGCACAACGTGGTCACCTCGAAGTACTTCGATCTGGCGATTGCCGCCGTGATAGGGCTGAACGTGGTCACGATGGCCATGGAATACTACATGATGCCGCTGGCATTGGAGTATGCGCTGAAGATTTTTAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAAGCTGCTCGCGCTAGGCGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATACTGTCGATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGACCATCATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGGCCAAGGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTCGGTAACCTGGGCCTGCTGTTTTTCCTACTATTCTTTATCTTTGCCGCACTCGGTGTGGAGCTGTTCGGGCGGCTCGAATGCTCCGACGAGGTGCCGTGCCAGGGTTTGGGAGAGCATGCACACTTTGCCAACTTCGGTATGGCCTTCTTGACGCTGTTCCGTGTGGCCACCGGTGACAACTGGAGCGGCATCATGAAGGACACGCTGCGGGACGACTGCGAC]

[+] EMBL BM588207             [CCGCGGACGCGTGGGCGGACGCGTGGGCAACTATTCGCCGATGCGACTGTTTGTGCACAACGTGGTCACCTCGAAGTACTTCGATCTGGCGATTGCCGCCGTGATAGGGCTGAACGTGGTCACGATGGCCATGGAATACTACATGATGCCGCTGGCATTGGAGTATGCGCTGAAGATTTTTAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAAGCTGCTCGCGCTAGGCGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATACTGTCGATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGACCATCATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGGCCAAGGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTCGGTAACCTGGGCCTGCTGTTTTTCCTACTATTCTTTATCTTTGCCGCACTCGGTGTGGAGCTGTTCGGGCGGCTCGAATGCTCCGACGAGGTGCCGTGCCAGGGTTTGGGAGAGCATGCACACTTTGCCAACTTCGGTATGGCCTTCTTGACGCTGTTCCGTGTGGCCACCGGTGACAACTGGAGCGGCATCATGAAGGACACGCTGCGGGACGACTGCGAC]




>consensus_2712#0
CCGCGGACGCGTGGGCGGACGCGTGGGCAACTATTCGCCGATGCGACTGTTTGTGCACAA
CGTGGTCACCTCGAAGTACTTCGATCTGGCGATTGCCGCCGTGATAGGGCTGAACGTGGT
CACGATGGCCATGGAATACTACATGATGCCGCTGGCATTGGAGTATGCGCTGAAGATTTT
TAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAAGCTGCTCGCGCTAGG
CGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATACTGTC
GATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGACCAT
CATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGGCCAA
GGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTCGGTAACCTGGG
CCTGCTGTTTTTCCTACTATTCTTTATCTTTGCCGCACTCGGTGTGGAGCTGTTCGGGCG
GCTCGAATGCTCCGACGAGGTGCCGTGCCAGGGTTTGGGAGAGCATGCACACTTTGCCAA
CTTCGGTATGGCCTTCTTGACGCTGTTCCGTGTGGCCACCGGTGACAACTGGAGCGGCAT
CATGAAGGACACGCTGCGGGACGACTGCGAC

consensusID : consensus_2712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [ATCGCCCGAGTTTATTTTNTTNTNTNTNCNTTGGCATTGGAGTATGCGCTGAAGATTTTTAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAACGCTGCTCGCGCTAGGCGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATACTGTCGATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGACCATCATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGGCCAAGGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTAAGCAATATCAACCGTTTGGCGCCATTGCCACCATTACTCATGTCACGTTTATTTCTTTTGCTTTTGTTCTCTCTTCCCCGGCCCGTACGATCGGAACACCGTTAGGTCGGTAACCTGGGCCTGCTGTTTTTCCTACTATTCTTATATCTTTGCCGCACTCGGTGTGGAGCTGTTCGGGCGGCTCGAATGCTCCG]

[+] EMBL AL934678             [ATCGCCCGAGTTTATTTTNTTNTNTNTNCNTTGGCATTGGAGTATGCGCTGAAGATTTTTAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAACGCTGCTCGCGCTAGGCGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATACTGTCGATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGACCATCATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGGCCAAGGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTAAGCAATATCAACCGTTTGGCGCCATTGCCACCATTACTCATGTCACGTTTATTTCTTTTGCTTTTGTTCTCTCTTCCCCGGCCCGTACGATCGGAACACCGTTAGGTCGGTAACCTGGGCCTGCTGTTTTTCCTACTATTCTTATATCTTTGCCGCACTCGGTGTGGAGCTGTTCGGGCGGCTCGAATGCTCCG]




>consensus_2712#1
ATCGCCCGAGTTTATTTTNTTNTNTNTNCNTTGGCATTGGAGTATGCGCTGAAGATTTTT
AACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAACGCTGCTCGCGCTAGG
CGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATACTGTC
GATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGACCAT
CATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGGCCAA
GGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTAAGCAATATCAA
CCGTTTGGCGCCATTGCCACCATTACTCATGTCACGTTTATTTCTTTTGCTTTTGTTCTC
TCTTCCCCGGCCCGTACGATCGGAACACCGTTAGGTCGGTAACCTGGGCCTGCTGTTTTT
CCTACTATTCTTATATCTTTGCCGCACTCGGTGTGGAGCTGTTCGGGCGGCTCGAATGCT
CCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2712#0      CCGCGGACGCGTGGGCGGACGCGTGGGCAACTATTCGCCGATGCGACTGTTTGTGCACAA 60
consensus_2712#1      ------------------------------------------------------------
                                                                                  

consensus_2712#0      CGTGGTCACCTCGAAGTACTTCGATCTGGCGATTGCCGCCGTGATAGGGCTGAACGTGGT 120
consensus_2712#1      ------------------------------------------------------------
                                                                                  

consensus_2712#0      CACGATGGCCATGGAATACTACATGATG---CCGCTGGCATTGGAGTATGCGCTGAAGAT 177
consensus_2712#1      ----ATCGCCCGAGTTTATTTTNTTNTNTNTNCNTTGGCATTGGAGTATGCGCTGAAGAT 56
                          ** ***   *  ** *   *  *     *  *************************

consensus_2712#0      TTTTAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAA-GCTGCTCGCGC 236
consensus_2712#1      TTTTAACTATTTCTTCACTGCCGTCTTTATACTCGAGGCGGCAATGAACGCTGCTCGCGC 116
                      ************************************************ ***********

consensus_2712#0      TAGGCGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATAC 296
consensus_2712#1      TAGGCGTGAAGATATACATGAAAGATCGCTGGAACCAGCTGGACGTCGCGATCGTGATAC 176
                      ************************************************************

consensus_2712#0      TGTCGATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGA 356
consensus_2712#1      TGTCGATCGTGGGCATTGTGCTGGAGGAACTGGAAACGAACATTATACCGATCAATCCGA 236
                      ************************************************************

consensus_2712#0      CCATCATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGG 416
consensus_2712#1      CCATCATACGTGTAATGCGCGTCCTGCGGATCGCCCGCGTACTAAAGCTGCTGAAGATGG 296
                      ************************************************************

consensus_2712#0      CCAAGGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTCGGTAACC 476
consensus_2712#1      CCAAGGGTATCCGTGCTCTCCTGGACACCGTAATGCAGGCGTTGCCACAGGTAAGCAATA 356
                      ****************************************************  * **  

consensus_2712#0      TGGGCC---TGCTGTTTTTCCTACTATTCTTTATCTTTGCCGCACTCGGTGTGGAGCTGT 533
consensus_2712#1      TCAACCGTTTGGCGCCATTGCCACCATTACTCATGTCACGTTTATTTCTTTTGCTTTTGT 416
                      *   **   **  *   ** * ** ***  * ** *       * *   * **    ***

consensus_2712#0      TCGGGCGGCTCGAATGC-TCCGA-CGAGGTGCCGTGCCAGGGTTTGGGAGAGCATGCACA 591
consensus_2712#1      TCTCTCTTCCCCGGCCCGTACGATCGGAACACCGTTAGGTCGGTAACCTGGGCCTGCTGT 476
                      **   *  * *     * * *** **     ****      * *     * ** ***   

consensus_2712#0      CTTTGCCAACTTCGGTATGGCCTTCTTGACGCTGTTCCGTGTGGCCACCGGTGACAACTG 651
consensus_2712#1      TTTTCCTACTATTCTTATATCTTTGCCGCACTCGGT--GTGGAGCTGTTCG-GGCGGCTC 533
                       *** * *   *   ***  * **   *     * *  ***  **     * * *  ** 

consensus_2712#0      GAGCGGCATCATGAAGGACACGCTGCGGGACGACTGCGAC 691
consensus_2712#1      GAATG-CTCCG----------------------------- 543
                      **  * *  *