cluster # 2753

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Anopheles gambiae
cluster # 2753 cluster # 2753 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2753#0 length = 622 sequences # 1

consensus_2753#1 length = 484 sequences # 1

consensusID : consensus_2753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [CCGAAGAGAGTGTGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTGTCTCGGTTTTTTTTGGGGGTTTTCAGTTGTTCCCTGCCCCGGTGGTGGATGGTGAAAATTCCTCTTCCCTTCTCAATTCCTCCCCAAGCTCGGAGGTCGGATCGGGCCCCCAAACGCGGCGTAGATATCGTGCACCCCCCCCAAAGGCTCCCTGTGTGTGTCGCATAGCCGGCACCTCGCAAAGGAACACATACCCCCGGCAGCGGTGGCTTTGTGACGAGAGCGAGAAACACCACCACCGCTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAAAAAAAACCGGTCAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCACGCAGGAACAAAAGTGAAGACGAAACGAAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAGGGGCGATTTCTTCCCTCCCTCCCCCTGTCCCGCACACATCGCAAAGATAAGGGTTGCCATTTTTTTTTCTGTAAAGATTAGTCCCTCGTACAGCAACAATCGCAGCTGTGTGGTTAACCGTGGCGCAGGTGTGTGTACAACAGTCATACTAAGTCAGCGAAGCAGG]

[+] EMBL BM587906             [CCGAAGAGAGTGTGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTGTCTCGGTTTTTTTTGGGGGTTTTCAGTTGTTCCCTGCCCCGGTGGTGGATGGTGAAAATTCCTCTTCCCTTCTCAATTCCTCCCCAAGCTCGGAGGTCGGATCGGGCCCCCAAACGCGGCGTAGATATCGTGCACCCCCCCCAAAGGCTCCCTGTGTGTGTCGCATAGCCGGCACCTCGCAAAGGAACACATACCCCCGGCAGCGGTGGCTTTGTGACGAGAGCGAGAAACACCACCACCGCTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAAAAAAAACCGGTCAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCACGCAGGAACAAAAGTGAAGACGAAACGAAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAGGGGCGATTTCTTCCCTCCCTCCCCCTGTCCCGCACACATCGCAAAGATAAGGGTTGCCATTTTTTTTTCTGTAAAGATTAGTCCCTCGTACAGCAACAATCGCAGCTGTGTGGTTAACCGTGGCGCAGGTGTGTGTACAACAGTCATACTAAGTCAGCGAAGCAGG]




>consensus_2753#0
CCGAAGAGAGTGTGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTG
TCTCGGTTTTTTTTGGGGGTTTTCAGTTGTTCCCTGCCCCGGTGGTGGATGGTGAAAATT
CCTCTTCCCTTCTCAATTCCTCCCCAAGCTCGGAGGTCGGATCGGGCCCCCAAACGCGGC
GTAGATATCGTGCACCCCCCCCAAAGGCTCCCTGTGTGTGTCGCATAGCCGGCACCTCGC
AAAGGAACACATACCCCCGGCAGCGGTGGCTTTGTGACGAGAGCGAGAAACACCACCACC
GCTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAAAAAAAACCGGTCAA
GAGTGTGTGACACTGGACGTGTGCGCTGGTGCACGCAGGAACAAAAGTGAAGACGAAACG
AAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAGGGGCGATTTCTTCCCTCCCTCCCC
CTGTCCCGCACACATCGCAAAGATAAGGGTTGCCATTTTTTTTTCTGTAAAGATTAGTCC
CTCGTACAGCAACAATCGCAGCTGTGTGGTTAACCGTGGCGCAGGTGTGTGTACAACAGT
CATACTAAGTCAGCGAAGCAGG

consensusID : consensus_2753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CCGGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTGTCTCGGTTTTTTGGGGTTTTTTTCAGTTGTTCCCTGCCCCGGGGGTGGATGGTGAAAATTCCTCTTCCCTTCTCAATTTCTCCCCAAGCTCGGAGGTCGGATCGTGCCACCAAACGCGGCGTAAATATCGTGCACCTCCAAAGGCTCTCTGTGTGTGTCGCATAGCCGGCACTTCGCAAAGGAACACATACCCCCGGCAGCGGTGGCTGTGTGACGAGAGCGAGAAACACCACCACCACTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAACAAAAAAAAACCGGTGATCCCCCCCCCCTTCAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCACTAGGAACAATAGTGAGGACGAAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAAGGCGATTTCTTCCCCGCCCCCCTGTCCC]

[+] EMBL BM610469             [CCGGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTGTCTCGGTTTTTTGGGGTTTTTTTCAGTTGTTCCCTGCCCCGGGGGTGGATGGTGAAAATTCCTCTTCCCTTCTCAATTTCTCCCCAAGCTCGGAGGTCGGATCGTGCCACCAAACGCGGCGTAAATATCGTGCACCTCCAAAGGCTCTCTGTGTGTGTCGCATAGCCGGCACTTCGCAAAGGAACACATACCCCCGGCAGCGGTGGCTGTGTGACGAGAGCGAGAAACACCACCACCACTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAACAAAAAAAAACCGGTGATCCCCCCCCCCTTCAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCACTAGGAACAATAGTGAGGACGAAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAAGGCGATTTCTTCCCCGCCCCCCTGTCCC]




>consensus_2753#1
CCGGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTGTCTCGGTTTT
TTGGGGTTTTTTTCAGTTGTTCCCTGCCCCGGGGGTGGATGGTGAAAATTCCTCTTCCCT
TCTCAATTTCTCCCCAAGCTCGGAGGTCGGATCGTGCCACCAAACGCGGCGTAAATATCG
TGCACCTCCAAAGGCTCTCTGTGTGTGTCGCATAGCCGGCACTTCGCAAAGGAACACATA
CCCCCGGCAGCGGTGGCTGTGTGACGAGAGCGAGAAACACCACCACCACTACACTCAGTG
GCCAAGGAACGACGATTAGGCACACTTTCCCAACAAAAAAAAACCGGTGATCCCCCCCCC
CTTCAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCACTAGGAACAATAGTGAGGACG
AAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAAGGCGATTTCTTCCCCGCCCCCCTG
TCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2753#0      CCGAAGAGAGTGTGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTG 60
consensus_2753#1      ----------CCGGGCACACAGAAGAGGCCGTGTCTCTCCGGTTGGTTCCTTCCTCGGTG 50
                                   ***********************************************

consensus_2753#0      TCTCGGTTTTTTTTGGGGGTTTTCAGTTGTTCCCTGCCCCGGTGGTGGATGGTGAAAATT 120
consensus_2753#1      TCTCGGTTTTTTGGGGTTTTTTTCAGTTGTTCCCTGCCCCGGGGGTGGATGGTGAAAATT 110
                      ************  **   *********************** *****************

consensus_2753#0      CCTCTTCCCTTCTCAATTCCTCCCCAAGCTCGGAGGTCGGATCGGGCCCCCAAACGCGGC 180
consensus_2753#1      CCTCTTCCCTTCTCAATTTCTCCCCAAGCTCGGAGGTCGGATCGTGCCACCAAACGCGGC 170
                      ****************** ************************* *** ***********

consensus_2753#0      GTAGATATCGTGCACCCCCCCCAAAGGCTCCCTGTGTGTGTCGCATAGCCGGCACCTCGC 240
consensus_2753#1      GTAAATATCGTGCACCTCC---AAAGGCTCTCTGTGTGTGTCGCATAGCCGGCACTTCGC 227
                      *** ************ **   ******** ************************ ****

consensus_2753#0      AAAGGAACACATACCCCCGGCAGCGGTGGCTTTGTGACGAGAGCGAGAAACACCACCACC 300
consensus_2753#1      AAAGGAACACATACCCCCGGCAGCGGTGGCTGTGTGACGAGAGCGAGAAACACCACCACC 287
                      ******************************* ****************************

consensus_2753#0      GCTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAA----AAAAAACCGG 356
consensus_2753#1      ACTACACTCAGTGGCCAAGGAACGACGATTAGGCACACTTTCCCAACAAAAAAAAACCGG 347
                       *********************************************    **********

consensus_2753#0      T---------------CAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCACGCAGGAA 401
consensus_2753#1      TGATCCCCCCCCCCTTCAAGAGTGTGTGACACTGGACGTGTGCGCTGGTGCAC-TAGGAA 406
                      *               *************************************  *****

consensus_2753#0      CAAAAGTGAAGACGAAACGAAACGAAACGGAAGCGTCAAAACTGCACCGGAAAAGGGGCG 461
consensus_2753#1      CAATAGTGAGGACGAAACGAA-----ACGGAAGCGTCAAAACTGCACCGGAAAAAGG-CG 460
                      *** ***** ***********     **************************** ** **

consensus_2753#0      ATTTCTTCCCTCCCTCCCCCTGTCCCGCACACATCGCAAAGATAAGGGTTGCCATTTTTT 521
consensus_2753#1      ATTTCTTCCCCGCC--CCCCTGTCCC---------------------------------- 484
                      **********  **  **********                                  

consensus_2753#0      TTTCTGTAAAGATTAGTCCCTCGTACAGCAACAATCGCAGCTGTGTGGTTAACCGTGGCG 581
consensus_2753#1      ------------------------------------------------------------
                                                                                  

consensus_2753#0      CAGGTGTGTGTACAACAGTCATACTAAGTCAGCGAAGCAGG 622
consensus_2753#1      -----------------------------------------