cluster # 276

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Anopheles gambiae
cluster # 276 cluster # 276 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_276#0 length = 846 sequences # 1

consensus_276#1 length = 789 sequences # 1

consensusID : consensus_276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 846
fasta sequence

                              [GAGGCAGAATCGCACGAGGGCTTAGCGAAGAAAAAAAAACACACACACACGTAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACATCAACAACAAAAAGATCGCAAGACAGTGGTTGTTACAGATGCAAAAGATTTCAAGCTTACGGGGAAACAGCACCATGTAGAAAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAAAGATATTGTGATATCGCCATGGTAGCTGCCGTGGCTGATAGCTGGCATCGAAATAGGGAAAGACGCGCTTGTAGGCCAATATACCCGCGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTAAAACTTTGAATATGTTTTTATTTGTTGTTTATCCCAAATTGATCTTGCTTAGAGATCTTATATTTTACAATCCATCTCTCCTCCTCTCTTCTTGTATGCGTACACAATCACACACGCTTTTAATTACCGGACGTAAAGGAAAGGAATTGAGTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAGAGACAGTGCCAGAAAATCGAGGTTTTTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCTCCGCAGGAAGATCATTTCTTAATCTATTAACGTTTATGGCTAATTAAGCGCAACACGCAGTTAGACCAAAATTCTCTNGGTGTTAGGGCCACAAACGTTACAGCCTTAAAAGGGGGATCCCCCTGACTTACGGACACACAAGCCACTAACGGGCCACAACGGGCCAAACCCGGAACCTTCCAATTG]

[+] EMBL BX467621             [GAGGCAGAATCGCACGAGGGCTTAGCGAAGAAAAAAAAACACACACACACGTAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACATCAACAACAAAAAGATCGCAAGACAGTGGTTGTTACAGATGCAAAAGATTTCAAGCTTACGGGGAAACAGCACCATGTAGAAAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAAAGATATTGTGATATCGCCATGGTAGCTGCCGTGGCTGATAGCTGGCATCGAAATAGGGAAAGACGCGCTTGTAGGCCAATATACCCGCGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTAAAACTTTGAATATGTTTTTATTTGTTGTTTATCCCAAATTGATCTTGCTTAGAGATCTTATATTTTACAATCCATCTCTCCTCCTCTCTTCTTGTATGCGTACACAATCACACACGCTTTTAATTACCGGACGTAAAGGAAAGGAATTGAGTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAGAGACAGTGCCAGAAAATCGAGGTTTTTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCTCCGCAGGAAGATCATTTCTTAATCTATTAACGTTTATGGCTAATTAAGCGCAACACGCAGTTAGACCAAAATTCTCTNGGTGTTAGGGCCACAAACGTTACAGCCTTAAAAGGGGGATCCCCCTGACTTACGGACACACAAGCCACTAACGGGCCACAACGGGCCAAACCCGGAACCTTCCAATTG]




>consensus_276#0
GAGGCAGAATCGCACGAGGGCTTAGCGAAGAAAAAAAAACACACACACACGTAGGCTTTC
CTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACATCAA
CAACAAAAAGATCGCAAGACAGTGGTTGTTACAGATGCAAAAGATTTCAAGCTTACGGGG
AAACAGCACCATGTAGAAAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGA
AAGATATTGTGATATCGCCATGGTAGCTGCCGTGGCTGATAGCTGGCATCGAAATAGGGA
AAGACGCGCTTGTAGGCCAATATACCCGCGAGTCAACATTCTTCCTCCTTATCTGCCAAC
CAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTAAAAC
TTTGAATATGTTTTTATTTGTTGTTTATCCCAAATTGATCTTGCTTAGAGATCTTATATT
TTACAATCCATCTCTCCTCCTCTCTTCTTGTATGCGTACACAATCACACACGCTTTTAAT
TACCGGACGTAAAGGAAAGGAATTGAGTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAG
AGACAGTGCCAGAAAATCGAGGTTTTTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCT
CCGCAGGAAGATCATTTCTTAATCTATTAACGTTTATGGCTAATTAAGCGCAACACGCAG
TTAGACCAAAATTCTCTNGGTGTTAGGGCCACAAACGTTACAGCCTTAAAAGGGGGATCC
CCCTGACTTACGGACACACAAGCCACTAACGGGCCACAACGGGCCAAACCCGGAACCTTC
CAATTG

consensusID : consensus_276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 789
fasta sequence

                              [GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGAAAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTACAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGCCGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTTGTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAGCGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTATGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAAGGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGGCGAGACACGTGCCAGAAAACATCGAGGGTCNNTGNCAGGTAAGGCGGACAACAAACGCTCCGGACACAGGACTCCGCAA]

[+] EMBL BX467240             [GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGAAAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACGATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTACAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTAAGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGCCGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTTGTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACATTCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATCGATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAGCGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTATGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAAGGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGGCGAGACACGTGCCAGAAAACATCGAGGGTCNNTGNCAGGTAAGGCGGACAACAAACGCTCCGGACACAGGACTCCGCAA]




>consensus_276#1
GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGA
AAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACG
ATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTA
CAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTA
AGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGC
CGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTT
GTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACAT
TCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATC
GATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAG
CGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTA
TGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAA
GGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGGCGAGACACGT
GCCAGAAAACATCGAGGGTCNNTGNCAGGTAAGGCGGACAACAAACGCTCCGGACACAGG
ACTCCGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_276#0      ---------------------------GAGGCAGAATCGC--ACGAGGGCTTAGCGAAGA 31
consensus_276#1      GCAGAATCGCCCACGAGGTTGACATATATTGCAAGGCTGTTAACTAGTGCTTAGCGAAGA 60
                                                   ***     *   ** ** ************

consensus_276#0      AAAAAAAACACACACACACGTAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACG 91
consensus_276#1      AAAAAAAACACCCACACACATAGGCTTTCCTTGAACCCTTCCTCCTGTGTTAGATAAACG 120
                     *********** ******* ****************************************

consensus_276#0      ATAGTTAGGAAGCAAAGCAACTACATCAACAACAAAAAGATCGCAAGACAGTGGTTGTTA 151
consensus_276#1      ATAGTTAGGAAGCAAAGCAACTACGTCAACCACAAAAAGAGCGCAAGACAGTGGTTGTTA 180
                     ************************ ***** ********* *******************

consensus_276#0      CAGATGCAAAAGATTTCAAGCTTACGGGGAAACAGCACCATGTAGAAAAAAAAGCCACTA 211
consensus_276#1      CAGATGGAAAAGATTTCAAGCTTACGGGGAAACAGCACACCATGTAGAAAAAAGCCACTA 240
                     ****** *******************************    *  * *************

consensus_276#0      AGAGACTGGTGGAAGATAGAGCTGGCGGAAA-GATATTGTGATATCGCCATGGTAGCTGC 270
consensus_276#1      AGAGACTGGTGGAAGATAGAGCTGGCGGAANAGATATTCTGATATCGCCATGTTAGCTGC 300
                     ******************************  ****** ************* *******

consensus_276#0      CGTGGCTGATAGCTGGCATCGAAATAGGGAAAGACG------------------------ 306
consensus_276#1      CGTAGCTGATAGCTGGCATCGAAATAGGGAAAGACGATTCCGGTTGTAGTTGTCGCATTT 360
                     *** ********************************                        

consensus_276#0      -------------------------CGCTTGTAGGC-CAATATACCCG-CGAGTCAACAT 339
consensus_276#1      GTGTAGCATCTTTGAAACCTCAACGCGCGTGTAGTCGCGATATACCCGACGAGTCAACAT 420
                                              *** ***** * * ********* ***********

consensus_276#0      TCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATC 399
consensus_276#1      TCTTCCTCCTTATCTGCCAACCAATTGCTCTCCTCTTTAAATTCCTCTTTTTATCTAATC 480
                     ************************************************************

consensus_276#0      GATCGATCGAATGTGT-AAAACTTTGAATATGTTTTTAT-TTGTTGTTTAT--CCCAAAT 455
consensus_276#1      GATCGATCGAATGTGTCGAAACTTTGAAAATGTTGCTATATCGTAGGTTATATCTCAAAG 540
                     ****************  ********** *****  *** * ** * ****  * **** 

consensus_276#0      TGATCTTGCTTAGAGATCTTATATTTTACAATCCATCTCTC---CTCCTCTCTTCTTGTA 512
consensus_276#1      CGATCTTACTTAGAGATCTTATATTTTACAATCCATCTCTCTTCCTCCTCTCTTCTTGTA 600
                      ****** *********************************   ****************

consensus_276#0      TGCGTACACAA--TCACACACGCTTTTAATTA--CCGGACGTAAAGGAA-AGGAATTGA- 566
consensus_276#1      TGCGTACACNAATNCCCACACGCTTTTAACTTACCCGGACGTANAAGGACAGGAATTCAA 660
                     ********* *   * ************* *   ********* * * * ******* * 

consensus_276#0      -GTTAGTTTTCAGCAAGCAAAGCACGCCAGAGGAGAGACAGTGCCAGAAAATCGAGGTTT 625
consensus_276#1      GGTTACATNGNAACCAGAACAACCATCAGGCAANAAAACANGGCCAGAGG--CGAGACAC 718
                      ****  *   * * ** * * *   *  *     * ***  ******    ****    

consensus_276#0      TTTGCCAGTAGGCGCTCAAAAACGCTCCGTCGGCTCCGCAGGAAGATCATTTCTTAATCT 685
consensus_276#1      GT-GCCAGAAAACATCGAGGGTCNNT--GNCAGGTAAGGCGGACAACAAACGCTCCGGAC 775
                      * ***** *  *    *    *  *  * * * *  *  ***  *  *   **      

consensus_276#0      ATTAACGTTTATGGCTAATTAAGCGCAACACGCAGTTAGACCAAAATTCTCTNGGTGTTA 745
consensus_276#1      ACAGGACTCCGCAA---------------------------------------------- 789
                     *      *                                                    

consensus_276#0      GGGCCACAAACGTTACAGCCTTAAAAGGGGGATCCCCCTGACTTACGGACACACAAGCCA 805
consensus_276#1      ------------------------------------------------------------
                                                                                 

consensus_276#0      CTAACGGGCCACAACGGGCCAAACCCGGAACCTTCCAATTG 846
consensus_276#1      -----------------------------------------