cluster # 2791

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Anopheles gambiae
cluster # 2791 cluster # 2791 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2791#0 length = 683 sequences # 1

consensus_2791#1 length = 390 sequences # 1

consensusID : consensus_2791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAATTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAAACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATTGCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAATAAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGAGTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAAACATGGACCAT]

[+] EMBL BX627161             [AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAATTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAAACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATTGCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAATAAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGAGTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAAACATGGACCAT]




>consensus_2791#0
AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAA
TTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAA
ACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATT
GCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAAT
AAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGA
GTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCA
ACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGGACGAACAG
TTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGGA
CAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCAG
TGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGCG
AGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAG
AAGGCCATGAAAACATGGACCAT

consensusID : consensus_2791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [ATCCCGAGGTTAAAGAGTGTATCGTTATGTTGTAGCATCTTCTAACAAAAGCATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGGGGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAACATGGAC]

[+] EMBL AL933364             [ATCCCGAGGTTAAAGAGTGTATCGTTATGTTGTAGCATCTTCTAACAAAAGCATCGACGCGGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGGGGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCGTTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAGCGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACAGAAGGCCATGAAACATGGAC]




>consensus_2791#1
ATCCCGAGGTTAAAGAGTGTATCGTTATGTTGTAGCATCTTCTAACAAAAGCATCGACGC
GGGTGTGGTCAACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGG
GGGGACGAACAGTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCA
AAACAAAAGGACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCG
TTTAAAATCAGTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAG
CGAGCCACGCGAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCG
TGACAGAACAGAAGGCCATGAAACATGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2791#0      AGCCATTTCGAGATTGCTGCAGCTCGTATTATTCTCGCACGGAAGCGCACTGCATTTCAA 60
consensus_2791#1      ------------------------------------------------------------
                                                                                  

consensus_2791#0      TTGGGGGGAGGTGGGCGTATTTAGTCATTTTATCGGATTGTATTTTTGTTATCGGATCAA 120
consensus_2791#1      ------------------------------------------------------------
                                                                                  

consensus_2791#0      ACTATCGTATAATGGCATCAGTGTCAAAGGCGTGATATGCAACGGGCGCGTCGAAACATT 180
consensus_2791#1      ------------------------------------------------------------
                                                                                  

consensus_2791#0      GCCGCATAGAATTGTTTTCATTGTAGGATCTAAATCATACCCCCCCTCGTAACCATTAAT 240
consensus_2791#1      ------------------------------------------------------------
                                                                                  

consensus_2791#0      AAGCAATGTTCGATAGAAAAGGCGATCTACTGCGCGTGCGTGTTATACGGTGCAAAGAGA 300
consensus_2791#1      --------------------------------------------ATCCCGAGGTTAAAGA 16
                                                                  ** * * *   * ***

consensus_2791#0      GTGTAGATCCGTTATGTTGTAGCATCCTTCTAACAAAAGCAATCGACGCGGGTGTGGTCA 360
consensus_2791#1      GTGTA---TCGTTATGTTGTAGCATC-TTCTAACAAAAGCA-TCGACGCGGGTGTGGTCA 71
                      *****    ***************** ************** ******************

consensus_2791#0      ACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGCGGG-ACGAACA 419
consensus_2791#1      ACACTCGGTGCCCTGGCATTAGTAGCGTAAGAACAAACGGGGCGAAAGGGGGGACGAACA 131
                      ************************************************ *** *******

consensus_2791#0      GTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAAACAAAAGG 479
consensus_2791#1      GTTTGTGAAGGTAATAGACAATTTAATCATTTGGGGAACAATCATTGCAAAA-CAAAAGG 190
                      **************************************************** *******

consensus_2791#0      ACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAATGGGAAACCGTTTAAAATCA 539
consensus_2791#1      ACAAATAAGACAGAACAGTGAGTTAGCGCGCATCCGGGAAAGGGAAACCGTTTAAAATCA 250
                      **************************************** *******************

consensus_2791#0      GTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACNAGAAGCGAGCCACGC 599
consensus_2791#1      GTGTTGTATCAGTGTGTATAAAGAGTTGCGCAGTAACTGCGCACAAGAAGCGAGCCACGC 310
                      ******************************************** ***************

consensus_2791#0      GAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACA 659
consensus_2791#1      GAGCTCTAGATGGAGGCATACTCGGGTGCGTTACCTATTTGCGGCAAGCGTGACAGAACA 370
                      ************************************************************

consensus_2791#0      GAAGGCCATGAAAACATGGACCAT 683
consensus_2791#1      GAAGGCCATGAAA-CATGGAC--- 390
                      ************* *******