cluster # 2840

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2840 cluster # 2840 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2840#0 length = 648 sequences # 1

consensus_2840#1 length = 494 sequences # 1

consensusID : consensus_2840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGGGATAATGAAAATGCAGCGGCAGAGCTGGGAAAACTGCTAGAAGCGAGCGTCTATCCGGTACCCCGAGTCGAAACATTGACGACGTGAGGGAAGCAAACAATTGCTTCTCGATTCTACGATAACGCTACGTAAATGTTAATGTCATATAATGGATTAAAATTATTTCCCATGCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGACAACGTTAGTTTATTTTTAGCATACCCCATTACACTATGCTCGAAAAAAAAACCTAAATAAAACAACACTT]

[+] EMBL BM613682             [CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGGGATAATGAAAATGCAGCGGCAGAGCTGGGAAAACTGCTAGAAGCGAGCGTCTATCCGGTACCCCGAGTCGAAACATTGACGACGTGAGGGAAGCAAACAATTGCTTCTCGATTCTACGATAACGCTACGTAAATGTTAATGTCATATAATGGATTAAAATTATTTCCCATGCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGACAACGTTAGTTTATTTTTAGCATACCCCATTACACTATGCTCGAAAAAAAAACCTAAATAAAACAACACTT]




>consensus_2840#0
CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCT
TTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCG
TAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACA
GCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGA
AGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAA
GCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTG
CCTCATTAGGGATAATGAAAATGCAGCGGCAGAGCTGGGAAAACTGCTAGAAGCGAGCGT
CTATCCGGTACCCCGAGTCGAAACATTGACGACGTGAGGGAAGCAAACAATTGCTTCTCG
ATTCTACGATAACGCTACGTAAATGTTAATGTCATATAATGGATTAAAATTATTTCCCAT
GCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGACAACGTTAGTTTATTTTTAGCAT
ACCCCATTACACTATGCTCGAAAAAAAAACCTAAATAAAACAACACTT

consensusID : consensus_2840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CCGGTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGAGATTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTGGGAAAATTGATAGAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTGCTTCTCGATTCAACGATAACGCTACGTAAATGAAC]

[+] EMBL BM577784             [CCGGTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGAGATTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTGGGAAAATTGATAGAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTGCTTCTCGATTCAACGATAACGCTACGTAAATGAAC]




>consensus_2840#1
CCGGTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCTTTTTCGTGTGTG
AAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCGTAAGGAGTTGCA
GGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACAGCGATGCAAAGT
GTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGAAGGCATCCGGCT
ACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAAGCGTCACTAAAG
TGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTGCCTCATTAGAGA
TTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTGGGAAAATTGATA
GAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTGCTTCTCGATTCAACGATAACG
CTACGTAAATGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2840#0      CCGGCGTGCCACTGCGATTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCT 60
consensus_2840#1      -----------CCG-GTTTTCCCATCGCATGCTCGCTAAATGTGTTGTGAATTTTGTGCT 48
                                 * * * *******************************************

consensus_2840#0      TTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCG 120
consensus_2840#1      TTTTCGTGTGTGAAGTTTTGTACTTGACTGAACTGAAGCGTACAGTTGAACAATTAAGCG 108
                      ************************************************************

consensus_2840#0      TAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACA 180
consensus_2840#1      TAAGGAGTTGCAGGGGAACAGTAGAATGAGTGTGTAATTCATAATGATCGGTGTAACACA 168
                      ************************************************************

consensus_2840#0      GCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGA 240
consensus_2840#1      GCGATGCAAAGTGTCCATCGTCGGTGCATACGCGATGCAACGCGGTCTGATCGGAATCGA 228
                      ************************************************************

consensus_2840#0      AGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAA 300
consensus_2840#1      AGGCATCCGGCTACTGCATCCGGCTGCCGCATGTTTCGGACAAACTGTGTATGGAAAGAA 288
                      ************************************************************

consensus_2840#0      GCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTG 360
consensus_2840#1      GCGTCACTAAAGTGTGCCCAGTGGGTCGTCGGTGTTTGAAAAGCTTGCCCGTACAATTTG 348
                      ************************************************************

consensus_2840#0      CCTCATTAGGGAT----------AATGAAAATGCAGCGGCAGAG-------------CTG 397
consensus_2840#1      CCTCATTAGAGATTGAATTAGAGAGTGAAAATGCAGCGGCAGAGTAGGACGAACTAGCTG 408
                      ********* ***          * *******************             ***

consensus_2840#0      GGAAAACTGCTAGAAGCGAGCGTCTATCCGGTACCCCGAGTCGAAACATTGACGACGTGA 457
consensus_2840#1      GGAAAATTGATAGAAGCGAGCGTTTATCTGGTTCCCCGAGTCCAAACATTG--------- 459
                      ****** ** ************* **** *** ********* ********         

consensus_2840#0      GGGAAGCAAACAATTGCTTCTCGATTCTACGATAACGCTACGTAAATGTTAATGTCATAT 517
consensus_2840#1      ----------------CTTCTCGATTCAACGATAACGCTACGTAAATG--AAC------- 494
                                      *********** ********************  **        

consensus_2840#0      AATGGATTAAAATTATTTCCCATGCTGCAATACGCTCGCCATGTTACGCTTACAAGTAGA 577
consensus_2840#1      ------------------------------------------------------------
                                                                                  

consensus_2840#0      CAACGTTAGTTTATTTTTAGCATACCCCATTACACTATGCTCGAAAAAAAAACCTAAATA 637
consensus_2840#1      ------------------------------------------------------------
                                                                                  

consensus_2840#0      AAACAACACTT 648
consensus_2840#1      -----------