These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCTGCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGATCGGCACGCTGCTCTTCAACATTGCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACGACGTGCTGTACAACACGGGTGATGCCCTGTACACGGCGCCCTGGTCTCGAGTGTCTCCGTACGTGGTCGGGGTCTACTTTGGATGGCTGATGGCGTCCAGCCGCGATAAGTTCACCATCACACAGAACCAATACCGATGGTACTGGCTGTTGGCCTGCTTCTGTGTGATCTTCAGCATGCATTCCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGTGGCCGTACGGTGGCTGATCTCATGGGCTGCCTGCTGGGTGATCCTCGCCACCGGATGCGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAACCTCCATCTTTTTCTTCTTCCTTTCACCGTCTAACGCTTTCTA] [+] EMBL BX623238 [TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCTGCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGATCGGCACGCTGCTCTTCAACATTGCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACGACGTGCTGTACAACACGGGTGATGCCCTGTACACGGCGCCCTGGTCTCGAGTGTCTCCGTACGTGGTCGGGGTCTACTTTGGATGGCTGATGGCGTCCAGCCGCGATAAGTTCACCATCACACAGAACCAATACCGATGGTACTGGCTGTTGGCCTGCTTCTGTGTGATCTTCAGCATGCATTCCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGTGGCCGTACGGTGGCTGATCTCATGGGCTGCCTGCTGGGTGATCCTCGCCACCGGATGCGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAACCTCCATCTTTTTCTTCTTCCTTTCACCGTCTAACGCTTTCTA] consensusID : consensus_2844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGATCGTAATGGCGTTCGGTGTAACGCTGCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTCGAGATACCGTACTGTAGGATCTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCCACCATCCCGCAACCAGCTCCGACGAAAACGACCGATTCCACCCACCACCCGCCACCACTGGTCCACCCGGTTTCGATCGAGAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGATGCCAGTGTGTGTCTGTGTGTGTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATACGCTAAGTGGACCCTTTTCCCAGCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGTGGGGGTAGCATCCCATGGGGGTGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACTTTCCCGTCTTTCTGGCGCACCTCCTTCGAGCACGTGGGGAGAGAGGAGCCGTCTCGCGTGGACCTCGGCTCGGTTGGC] [+] EMBL BX625910 [CGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGATCGTAATGGCGTTCGGTGTAACGCTGCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTCGAGATACCGTACTGTAGGATCTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCCACCATCCCGCAACCAGCTCCGACGAAAACGACCGATTCCACCCACCACCCGCCACCACTGGTCCACCCGGTTTCGATCGAGAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGATGCCAGTGTGTGTCTGTGTGTGTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATACGCTAAGTGGACCCTTTTCCCAGCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGTGGGGGTAGCATCCCATGGGGGTGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACTTTCCCGTCTTTCTGGCGCACCTCCTTCGAGCACGTGGGGAGAGAGGAGCCGTCTCGCGTGGACCTCGGCTCGGTTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2844#0 TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCT 60 consensus_2844#1 -----CGGTTACTCAAACATTGTAACGCGTG-TGCTTTCTTCCAAATTCTTCGTC-CACA 53 * ** * ** *** * *** * * ** ***** * * consensus_2844#0 GCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGAT 120 consensus_2844#1 TCAACAAGCTGACGTACGGAAT--CTACCTTCTCAACCCGCTGATTATCATCGTCACCTT 111 * * * *** ** * * * * *** * ** ** * * * consensus_2844#0 CGGCACGCTGCTCTTCAACATT-GCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACG 179 consensus_2844#1 TGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGAT------CGT--AATG 163 *** * * ** ** * *** ** ** **** ** * *** * * consensus_2844#0 ACGTGCTGTACAACACGGGTGATGCCCTGTACA-CGGCGCCCTGGTCT--CGAGTGTCTC 236 consensus_2844#1 GCGTTCGGTGTAACGC---TGCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTC 220 *** * ** *** * ** * *** * * *** * ** * ** ** ** consensus_2844#0 CGTACGTGGTCGGGGTCTACTTTGGATG-GCTGATGGCGTCCAGCCGCGATAAGTTCACC 295 consensus_2844#1 GAGATACCGTACTGTAGGATCTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCC 280 * ** * * * * * * * * * ** **** * ** consensus_2844#0 ATCACACAG-AACCAATACCGATGGTACTGGCTG--TTGGCCTGCTTCTGTGTGATCTTC 352 consensus_2844#1 ACCATCCCGCAACCAGCTCCGACGAAAACGACCGATTCCACCCACCACC-CGCCACCACT 339 * ** * * ***** **** * * * * * * ** * * * * * consensus_2844#0 AGCATGCATT-CCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGT 411 consensus_2844#1 GGTCCACCCGGTTTCGATCGAGAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGA 399 * * ***** ** ** * * * * * **** ** ** consensus_2844#0 GGCCGTACGGTGGCTGATCTCATGGGC-TGCCTGCTGGGTGATCCTC-GCCACCGGATGC 469 consensus_2844#1 TGCCAGTGTGTGTCTGTGTGTGTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATAC 459 *** *** *** * * ** * * ** * * ** * ** * consensus_2844#0 GGTTACTCAAACATTGTAACGCGTGT----GCTTTCTTCCAAATTCTTCGTCCACATCAA 525 consensus_2844#1 GCTAAGTGGACCCTTTTCCCAGCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGT 519 * * * * * * ** * * ** * * * * ** * ** consensus_2844#0 CAAGCTGACGTAC----GGAATCTACCTTCTCAACC---CGCTGATTATCATCGTCACCT 578 consensus_2844#1 GGGGGTAGCATCCCATGGGGGTGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACT 579 * * * * * ** * * * * ** * * * *** * * ** ** consensus_2844#0 TTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAAC 638 consensus_2844#1 TT--CCCGTCTTTCTGGCGCACCTCCTTCGAGCACGTGG-GGAGAGAGGAGCCGTCTCGC 636 ** * *** ** * * * *** * * * * * * * * * * consensus_2844#0 CTCCATCTTTTTCTTCTTCCTTTCACCGTCTAACGCTTTCTA 680 consensus_2844#1 GTGGACCTCGGCTCGGTTGGC--------------------- 657 * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||