cluster # 2847

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Anopheles gambiae
cluster # 2847 cluster # 2847 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2847#0 length = 648 sequences # 1

consensus_2847#1 length = 489 sequences # 1

consensusID : consensus_2847#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATGTAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGGAAAGAAAACAGACCGATAAATAAGAATAAATGTTATTACAATGTAGTGAATGATTTATAAAAGGTGGGAGAAACGAAAATTGAAAGAGGAAAAGCCTCTGGATTGTTCGTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAATAGTTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATTAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGTAATGTTAAGCCGTTCGTGGATAGGATCAACGCAACCTACGAGCCAATGTAATGAAAGAAAATTTAATGAAACAATTTCGCAAAGCGTTCGGCTATACTGTGTGAAAGTCAGTTGCGTTATTATTAAAACTATAGAATCAAAACAAAACACAATAGTACGCAACCA]

[+] EMBL BM653791             [CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATGTAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGGAAAGAAAACAGACCGATAAATAAGAATAAATGTTATTACAATGTAGTGAATGATTTATAAAAGGTGGGAGAAACGAAAATTGAAAGAGGAAAAGCCTCTGGATTGTTCGTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAATAGTTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATTAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGTAATGTTAAGCCGTTCGTGGATAGGATCAACGCAACCTACGAGCCAATGTAATGAAAGAAAATTTAATGAAACAATTTCGCAAAGCGTTCGGCTATACTGTGTGAAAGTCAGTTGCGTTATTATTAAAACTATAGAATCAAAACAAAACACAATAGTACGCAACCA]




>consensus_2847#0
CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATG
TAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCC
CATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGC
ACGGGAAAGAAAACAGACCGATAAATAAGAATAAATGTTATTACAATGTAGTGAATGATT
TATAAAAGGTGGGAGAAACGAAAATTGAAAGAGGAAAAGCCTCTGGATTGTTCGTATATT
CATGACTGTGTCATTTGCCAATGTGAAATAAATAGTTTCTGTAAACAGGTGGAAGCAAAT
TTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATTAAACCAAAAACAAAACC
AGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGT
CGTAATGTTAAGCCGTTCGTGGATAGGATCAACGCAACCTACGAGCCAATGTAATGAAAG
AAAATTTAATGAAACAATTTCGCAAAGCGTTCGGCTATACTGTGTGAAAGTCAGTTGCGT
TATTATTAAAACTATAGAATCAAAACAAAACACAATAGTACGCAACCA

consensusID : consensus_2847#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATGCTAGATATGATAATTTGATGTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGCAACACGAAAACAGACCGACTAAAATAACGAAATAAACTGCTTACTTACAACTGGTACGCTGCACACTGGGTTTACTAAACAGGGTGGGAGAACACCGAAAACTTGANAACGAGGANAAAGCCTCTGGACTTGGTTCCGCTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAACGGTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATAAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGT]

[+] EMBL AL933378             [GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATGCTAGATATGATAATTTGATGTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGCAACACGAAAACAGACCGACTAAAATAACGAAATAAACTGCTTACTTACAACTGGTACGCTGCACACTGGGTTTACTAAACAGGGTGGGAGAACACCGAAAACTTGANAACGAGGANAAAGCCTCTGGACTTGGTTCCGCTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAACGGTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATAAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAAAGCCGTCGT]




>consensus_2847#1
GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATGCTAGATATGATAATTTGATGTTAC
TTTAAAGCACGGTATACCCGCTTTAACGATCGCTTCCCATACCAACTCCATGGTACTGTG
TTGTCAGATACAAAAGGAATATGTACTTGTGTTTTGCACGGCAACACGAAAACAGACCGA
CTAAAATAACGAAATAAACTGCTTACTTACAACTGGTACGCTGCACACTGGGTTTACTAA
ACAGGGTGGGAGAACACCGAAAACTTGANAACGAGGANAAAGCCTCTGGACTTGGTTCCG
CTATATTCATGACTGTGTCATTTGCCAATGTGAAATAAACGGTTCTGTAAACAGGTGGAA
GCAAATTTGTACAAGGGAAGCATTAACCTTGCAATTTCCCGCTAAGATAAAACCAAAAAC
AAAACCAGAGTATAGCTACACTTAAAGAAAAATACAATCCATATAAAATCACTCGAAAAA
AGCCGTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2847#0      CCGCGGACGCGTGGGTTCTTACGTTACGCGTAAAAAGTCTCTGCACGTGTTTGCAGCATG 60
consensus_2847#1      ------------------------GAATCCCCGAGGTTATCTGCACGTGTTTGCAGCATG 36
                                               *  *    *   * *********************

consensus_2847#0      -TAGATATGATAATTTGATTTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTC 119
consensus_2847#1      CTAGATATGATAATTTGATGTTACTTTAAAGCACGGTATACCCGCTTTAACGATCGCTTC 96
                       ****************** ****************************************

consensus_2847#0      CCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTG 179
consensus_2847#1      CCATACCAACTCCATGGTACTGTGTTGTCAGATACAAAAGGAATATGTACTTGTGTTTTG 156
                      ************************************************************

consensus_2847#0      CACGGGAAA--GAAAACAGACCGAT--AAATAA--GAATAAATG--TTA-TTACAA---- 226
consensus_2847#1      CACGGCAACACGAAAACAGACCGACTAAAATAACGAAATAAACTGCTTACTTACAACTGG 216
                      ***** **   *************   ******   ******    *** ******    

consensus_2847#0      TGTAGTGAAT----GATTTATAAAA---GGTGGGAGAAA--CGAAAATTGAAAGA----G 273
consensus_2847#1      TACGCTGCACACTGGGTTTACTAAACAGGGTGGGAGAACACCGAAAACTTGANAACGAGG 276
                      *    ** *     * ****  ***   **********   ****** *  *  *    *

consensus_2847#0      GAAAAGCCTCTGGATT--GTTCG--TATATTCATGACTGTGTCATTTGCCAATGTGAAAT 329
consensus_2847#1      ANAAAGCCTCTGGACTTGGTTCCGCTATATTCATGACTGTGTCATTTGCCAATGTGAAAT 336
                        ************ *  ****   ***********************************

consensus_2847#0      AAATAGTTTCTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAAT 389
consensus_2847#1      AAACGGTT-CTGTAAACAGGTGGAAGCAAATTTGTACAAGGGAAGCATTAACCTTGCAAT 395
                      ***  *** ***************************************************

consensus_2847#0      TTCCCGCTAAGATTAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATAC 449
consensus_2847#1      TTCCCGCTAAGATAAAACCAAAAACAAAACCAGAGTATAGCTACACTTAAAGAAAAATAC 455
                      ************* **********************************************

consensus_2847#0      AATCCATATAAAATCACTCGAAAAAAGCCGTCGTAATGTTAAGCCGTTCGTGGATAGGAT 509
consensus_2847#1      AATCCATATAAAATCACTCGAAAAAAGCCGTCGT-------------------------- 489
                      **********************************                          

consensus_2847#0      CAACGCAACCTACGAGCCAATGTAATGAAAGAAAATTTAATGAAACAATTTCGCAAAGCG 569
consensus_2847#1      ------------------------------------------------------------
                                                                                  

consensus_2847#0      TTCGGCTATACTGTGTGAAAGTCAGTTGCGTTATTATTAAAACTATAGAATCAAAACAAA 629
consensus_2847#1      ------------------------------------------------------------
                                                                                  

consensus_2847#0      ACACAATAGTACGCAACCA 648
consensus_2847#1      -------------------