cluster # 2848

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Anopheles gambiae
cluster # 2848 cluster # 2848 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2848#0 length = 671 sequences # 1

consensus_2848#1 length = 341 sequences # 1

consensusID : consensus_2848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTATTACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCACCCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCCAGCTACAAAGGTAGATGAATCCAGTCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCGGGGGCAGTTTAATAACTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAAACAACCTTCCACCGGATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATGACGAATCGGCACAACAAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGTCAAGAAAGTACTACGATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCGCAATTTGTGTAGCGTGCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGGTGGGATTTGGTGCTCTTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAATTACAGGCCCTA]

[+] EMBL BM587750             [CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTATTACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCACCCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCCAGCTACAAAGGTAGATGAATCCAGTCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCGGGGGCAGTTTAATAACTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAAACAACCTTCCACCGGATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATGACGAATCGGCACAACAAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGTCAAGAAAGTACTACGATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCGCAATTTGTGTAGCGTGCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGGTGGGATTTGGTGCTCTTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAATTACAGGCCCTA]




>consensus_2848#0
CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTAT
TACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCAC
CCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCCAGCTACAA
AGGTAGATGAATCCAGTCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGT
TTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCG
GGGGCAGTTTAATAACTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAA
ACAACCTTCCACCGGATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATG
ACGAATCGGCACAACAAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGT
CAAGAAAGTACTACGATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCG
CAATTTGTGTAGCGTGCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGG
TGGGATTTGGTGCTCTTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAAT
TACAGGCCCTA

consensusID : consensus_2848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CCGCCCACGCGTCCGTAAGTACGGCTACAATGCGCAACATATTCACACATTTAACAGTCGTGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTCCTATAAATTACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCTACGATCGACATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGGATCTCACTGTAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC]

[+] EMBL BM638375             [CCGCCCACGCGTCCGTAAGTACGGCTACAATGCGCAACATATTCACACATTTAACAGTCGTGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTCCTATAAATTACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCTACGATCGACATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGGATCTCACTGTAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC]




>consensus_2848#1
CCGCCCACGCGTCCGTAAGTACGGCTACAATGCGCAACATATTCACACATTTAACAGTCG
TGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTCCTATAAATT
ACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCTACGATCGAC
ATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGGATCTCACTG
TAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCGCGATCGGTT
GGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2848#0      CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTAT 60
consensus_2848#1      -------CCGCCCACGCGTCCGTAAG--TACGGCTACAATGCGCAACATATTCACACATT 51
                               *   *    * *   **  * **  ***  *    *  ** **    *  *

consensus_2848#0      TACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCAC 120
consensus_2848#1      TAACAGTCGTGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTC 111
                      ** **    ****  ** ******   ****   ****  * **********  * ** *

consensus_2848#0      CCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCC-------- 172
consensus_2848#1      CTATAAATTACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCT 171
                      *  **********   ********  ******** *********** ***          

consensus_2848#0      ------------------------AGCTACAAAGGTAGAT---GAATCCAG--------- 196
consensus_2848#1      ACGATCGACATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGG 231
                                              *  **** ** * * *   ****  **         

consensus_2848#0      -TCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGTTTCAACACATGGCCG 255
consensus_2848#1      ATCTCACTGTAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCG 291
                       **  * ** * ************  *********** **********************

consensus_2848#0      CGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCGGGGGCAGTTTAATAA 315
consensus_2848#1      CGATCGGTTGGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC---------- 341
                      **************************** ************** ******          

consensus_2848#0      CTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAAACAACCTTCCACCGG 375
consensus_2848#1      ------------------------------------------------------------
                                                                                  

consensus_2848#0      ATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATGACGAATCGGCACAAC 435
consensus_2848#1      ------------------------------------------------------------
                                                                                  

consensus_2848#0      AAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGTCAAGAAAGTACTACG 495
consensus_2848#1      ------------------------------------------------------------
                                                                                  

consensus_2848#0      ATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCGCAATTTGTGTAGCGT 555
consensus_2848#1      ------------------------------------------------------------
                                                                                  

consensus_2848#0      GCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGGTGGGATTTGGTGCTC 615
consensus_2848#1      ------------------------------------------------------------
                                                                                  

consensus_2848#0      TTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAATTACAGGCCCTA 671
consensus_2848#1      --------------------------------------------------------