cluster # 2876

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Anopheles gambiae
cluster # 2876 cluster # 2876 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2876#0 length = 424 sequences # 1

consensus_2876#1 length = 201 sequences # 1

consensusID : consensus_2876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [GCATGGCGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGATATTTATGTAAAAAAAGAAGAGTAAAAAAAGGAAAAACAACAAAAAAATAAAAATAAACTGAAAAACAACAAACAAAACATACGAACACACACATACACATACCCAAAACTACCAATACTAATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGATTCTTTACGACTCGACAGAGAAGAAGAAGAAGAAGAAGAGAAACATTCGAACAGCATGAACGAACGAAAGGAAGCGATGGAAAGAGGAGAAAAACATACACACACATACACACTGTTAATACTGGACGGTACAGGAATTGTGAAGATGCACAACACAAAAAGATGCATCAAACGAAAAGGTAAAA]

[+] EMBL BX609535             [GCATGGCGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGATATTTATGTAAAAAAAGAAGAGTAAAAAAAGGAAAAACAACAAAAAAATAAAAATAAACTGAAAAACAACAAACAAAACATACGAACACACACATACACATACCCAAAACTACCAATACTAATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGATTCTTTACGACTCGACAGAGAAGAAGAAGAAGAAGAAGAGAAACATTCGAACAGCATGAACGAACGAAAGGAAGCGATGGAAAGAGGAGAAAAACATACACACACATACACACTGTTAATACTGGACGGTACAGGAATTGTGAAGATGCACAACACAAAAAGATGCATCAAACGAAAAGGTAAAA]




>consensus_2876#0
GCATGGCGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA
TATTTATGTAAAAAAAGAAGAGTAAAAAAAGGAAAAACAACAAAAAAATAAAAATAAACT
GAAAAACAACAAACAAAACATACGAACACACACATACACATACCCAAAACTACCAATACT
AATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGAT
TCTTTACGACTCGACAGAGAAGAAGAAGAAGAAGAAGAGAAACATTCGAACAGCATGAAC
GAACGAAAGGAAGCGATGGAAAGAGGAGAAAAACATACACACACATACACACTGTTAATA
CTGGACGGTACAGGAATTGTGAAGATGCACAACACAAAAAGATGCATCAAACGAAAAGGT
AAAA

consensusID : consensus_2876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [AACCGTATGTAACTAAAAACAAGAAAAACAACAAAAAAATAAAAATAAACTGAAAAACAACAAACAAAACATACGAACACACACATACACATACACAAAACTACCAATACTAATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGATCCTTTACGACTCGACAGAGAAGAAGAAGAA]

[+] EMBL BX612092             [AACCGTATGTAACTAAAAACAAGAAAAACAACAAAAAAATAAAAATAAACTGAAAAACAACAAACAAAACATACGAACACACACATACACATACACAAAACTACCAATACTAATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGATCCTTTACGACTCGACAGAGAAGAAGAAGAA]




>consensus_2876#1
AACCGTATGTAACTAAAAACAAGAAAAACAACAAAAAAATAAAAATAAACTGAAAAACAA
CAAACAAAACATACGAACACACACATACACATACACAAAACTACCAATACTAATAGGAAA
ACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGATCCTTTACGA
CTCGACAGAGAAGAAGAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2876#0      GCATGGCGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA 60
consensus_2876#1      ------------------------------------------------------------
                                                                                  

consensus_2876#0      TATTTATGTAAAAAAAGAAGAGTAAAAAAAGGAAAAACAACAAAAAAATAAAAATAAACT 120
consensus_2876#1      ---------AACCGTATGTAACTAAAAACAAGAAAAACAACAAAAAAATAAAAATAAACT 51
                               **    *    * ****** * *****************************

consensus_2876#0      GAAAAACAACAAACAAAACATACGAACACACACATACACATACCCAAAACTACCAATACT 180
consensus_2876#1      GAAAAACAACAAACAAAACATACGAACACACACATACACATACACAAAACTACCAATACT 111
                      ******************************************* ****************

consensus_2876#0      AATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGAT 240
consensus_2876#1      AATAGGAAAACGACTGAGTGTCTCAATGAACACGATGAGAGGATTGTGGGGGGGATGGAT 171
                      ************************************************************

consensus_2876#0      TCTTTACGACTCGACAGAGAAGAAGAAGAAGAAGAAGAGAAACATTCGAACAGCATGAAC 300
consensus_2876#1      CCTTTACGACTCGACAGAGAAGAAGAAGAA------------------------------ 201
                       *****************************                              

consensus_2876#0      GAACGAAAGGAAGCGATGGAAAGAGGAGAAAAACATACACACACATACACACTGTTAATA 360
consensus_2876#1      ------------------------------------------------------------
                                                                                  

consensus_2876#0      CTGGACGGTACAGGAATTGTGAAGATGCACAACACAAAAAGATGCATCAAACGAAAAGGT 420
consensus_2876#1      ------------------------------------------------------------
                                                                                  

consensus_2876#0      AAAA 424
consensus_2876#1      ----