cluster # 2882

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Anopheles gambiae
cluster # 2882 cluster # 2882 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2882#0 length = 674 sequences # 1

consensus_2882#1 length = 470 sequences # 1

consensusID : consensus_2882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [CCGTGTTGCTCCTAATGATGAAGCGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGATTGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAAAGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAATGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTGGATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAGGATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGCAGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCACCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGACGGAACTGAAAGCGAACGGACGGAACTGGTGGGCTGGTGGTGGTCAATACACGACAAGACGGTTTGTCCATCGTCACGTGAACAAAGTGCGTGCCGTGCGAGTGTTGAAATTGATATGGGATGTGGGGGGTGGAAAAGGGGCTTTACCCATCATCAGTGACTTCAGCTGTCACACACCAAGGTGCAATAATTTA]

[+] EMBL BM640170             [CCGTGTTGCTCCTAATGATGAAGCGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGATTGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAAAGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAATGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTGGATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAGGATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGCAGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCACCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGACGGAACTGAAAGCGAACGGACGGAACTGGTGGGCTGGTGGTGGTCAATACACGACAAGACGGTTTGTCCATCGTCACGTGAACAAAGTGCGTGCCGTGCGAGTGTTGAAATTGATATGGGATGTGGGGGGTGGAAAAGGGGCTTTACCCATCATCAGTGACTTCAGCTGTCACACACCAAGGTGCAATAATTTA]




>consensus_2882#0
CCGTGTTGCTCCTAATGATGAAGCGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGAT
TGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAA
AGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAA
TGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTG
GATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAG
GATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGC
AGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCA
CCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGA
CGGAACTGAAAGCGAACGGACGGAACTGGTGGGCTGGTGGTGGTCAATACACGACAAGAC
GGTTTGTCCATCGTCACGTGAACAAAGTGCGTGCCGTGCGAGTGTTGAAATTGATATGGG
ATGTGGGGGGTGGAAAAGGGGCTTTACCCATCATCAGTGACTTCAGCTGTCACACACCAA
GGTGCAATAATTTA

consensusID : consensus_2882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [GACCCACGCGTCCGGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGATTGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAAAGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAATGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTGGATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAGGATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGCAGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCACCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGA]

[+] EMBL BM652706             [GACCCACGCGTCCGGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGATTGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAAAGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAATGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTGGATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAGGATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGCAGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCACCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGA]




>consensus_2882#1
GACCCACGCGTCCGGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGATTGTAAGTGTG
TGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAAAGGAGTGCGC
CGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAATGTGTGTGTG
TGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTGGATGTGTTTT
TAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAGGATTATCAGT
AGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGCAGGTCCTGCT
GAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCACCAACGGCGA
GACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2882#0      CCGTGTTGCTCCTAATGATGAAGCGTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGAT 60
consensus_2882#1      -------GACCCACGCGTCCG---GTCCGATGGTCGATCAGCAGTGAGTGTGCGGGCGAT 50
                             *  **    *       ************************************

consensus_2882#0      TGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAA 120
consensus_2882#1      TGTAAGTGTGTGATTAGTGGATGTTCTCGATAAAACAAAACGCCAAACGAACCACAAAAA 110
                      ************************************************************

consensus_2882#0      AGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAA 180
consensus_2882#1      AGGAGTGCGCCGAAAGGTGAAAGATGAAGCTAAAAGCCTTACCAAAAAGAGTTTTGTGAA 170
                      ************************************************************

consensus_2882#0      TGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTG 240
consensus_2882#1      TGTGTGTGTGTGTTTATGTGGTCTCTTAGTGGCACAAATTCCAACAGGAGGAAACAAGTG 230
                      ************************************************************

consensus_2882#0      GATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAG 300
consensus_2882#1      GATGTGTTTTTAACAAAATACCCGCCACAGTGCGTTAGTGTGCTGGAATCATTCGAAAAG 290
                      ************************************************************

consensus_2882#0      GATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGC 360
consensus_2882#1      GATTATCAGTAGGCCGTGCGATTGAAAGAAGTACGCGGCAGCTTTGCGTGAGGTAGCGGC 350
                      ************************************************************

consensus_2882#0      AGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCA 420
consensus_2882#1      AGGTCCTGCTGAGCGAACATCTCCATCTTCCACTGTTCACCGTTTTCTCACGATAACGCA 410
                      ************************************************************

consensus_2882#0      CCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGA 480
consensus_2882#1      CCAACGGCGAGACGGCGAACGGTGACTTACTTTCGAGGATACACTCGAGAGCTTGGCAGA 470
                      ************************************************************

consensus_2882#0      CGGAACTGAAAGCGAACGGACGGAACTGGTGGGCTGGTGGTGGTCAATACACGACAAGAC 540
consensus_2882#1      ------------------------------------------------------------
                                                                                  

consensus_2882#0      GGTTTGTCCATCGTCACGTGAACAAAGTGCGTGCCGTGCGAGTGTTGAAATTGATATGGG 600
consensus_2882#1      ------------------------------------------------------------
                                                                                  

consensus_2882#0      ATGTGGGGGGTGGAAAAGGGGCTTTACCCATCATCAGTGACTTCAGCTGTCACACACCAA 660
consensus_2882#1      ------------------------------------------------------------
                                                                                  

consensus_2882#0      GGTGCAATAATTTA 674
consensus_2882#1      --------------