cluster # 2893

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Anopheles gambiae
cluster # 2893 cluster # 2893 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2893#0 length = 617 sequences # 1

consensus_2893#1 length = 527 sequences # 1

consensusID : consensus_2893#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGTCGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTCCTTTCCTTCGTGGTAAG]

[+] EMBL BM590974             [CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGTCGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTCCTTTCCTTCGTGGTAAG]




>consensus_2893#0
CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGT
TCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCC
TGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGG
ACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCA
ACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCG
AGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCG
TGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGT
CGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACG
ACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGG
AGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTC
CTTTCCTTCGTGGTAAG

consensusID : consensus_2893#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [AATCGCCCGAGGTTTGCTCCAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTCCTTTCCTT]

[+] EMBL AL934781             [AATCGCCCGAGGTTTGCTCCAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTCCTTTCCTT]




>consensus_2893#1
AATCGCCCGAGGTTTGCTCCAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGC
GGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAA
ACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGA
CAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTT
TACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCGAGCGGGTCATGCTGTA
CGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGT
CGGGCTGCTGAATGCGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCA
ACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGT
TAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTCCTTTCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2893#0      CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGT 60
consensus_2893#1      ---------------AATCGCCCGAGG-TTTGCTCCAGCTAACATCGATGGATATGCAGT 44
                                        *  ******   *     ************************

consensus_2893#0      TCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCC 120
consensus_2893#1      TCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCC 104
                      ************************************************************

consensus_2893#0      TGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGG 180
consensus_2893#1      TGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGG 164
                      ************************************************************

consensus_2893#0      ACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCA 240
consensus_2893#1      ACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCA 224
                      ************************************************************

consensus_2893#0      ACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCG 300
consensus_2893#1      ACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCG 284
                      **************************************************** *******

consensus_2893#0      AGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCG 360
consensus_2893#1      AGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCG 344
                      ************************************************************

consensus_2893#0      TGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGT 420
consensus_2893#1      TGCCGCCGAGTACGGTCGGGCTGCTGAATGCGA--------------------------- 377
                      *********************************                           

consensus_2893#0      CGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACG 480
consensus_2893#1      --------------------------------------ATTACGGCGAGAATTGATGACG 399
                                                            **********************

consensus_2893#0      ACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGG 540
consensus_2893#1      ACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGG 459
                      ************************************************************

consensus_2893#0      AGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTC 600
consensus_2893#1      AGGACCTGTACGACATCACGTTAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTC 519
                      ********************************** *************************

consensus_2893#0      CTTTCCTTCGTGGTAAG 617
consensus_2893#1      CTTTCCTT--------- 527
                      ********