cluster # 2901

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Anopheles gambiae
cluster # 2901 cluster # 2901 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2901#0 length = 738 sequences # 1

consensus_2901#1 length = 442 sequences # 1

consensusID : consensus_2901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 738
fasta sequence

                              [CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAGGCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATTATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCACATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAACTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGTTCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTTCAGTAAACCAGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCTGTCTACNGCGTGAGAATTA]

[+] EMBL BX624856             [CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAGGCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATTATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCACATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAACTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGTTCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTTCAGTAAACCAGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCTGTCTACNGCGTGAGAATTA]




>consensus_2901#0
CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAG
GCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATT
ATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCA
CATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAA
CTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGT
TCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTT
CAGTAAACCAGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGAC
ACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAG
ACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACG
ATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCGG
GAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAAC
TACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCTG
TCTACNGCGTGAGAATTA

consensusID : consensus_2901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [AATCGCCCGAGGGTAACAAGAAGAAGATGTATGTTGAACGGGATTAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCTGTCTACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGTAGGATGCGACAAAGTGATGTTAAAA]

[+] EMBL AL932504             [AATCGCCCGAGGGTAACAAGAAGAAGATGTATGTTGAACGGGATTAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCTGTCTACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGTAGGATGCGACAAAGTGATGTTAAAA]




>consensus_2901#1
AATCGCCCGAGGGTAACAAGAAGAAGATGTATGTTGAACGGGATTAAGCGTGGCCGACAC
ATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGAC
AGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGAT
ACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCGGGA
AGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTA
CACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCTGTC
TACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGTAGG
ATGCGACAAAGTGATGTTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2901#0      CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAG 60
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      GCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATT 120
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      ATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCA 180
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      CATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAA 240
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      CTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGT 300
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      TCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTT 360
consensus_2901#1      ------------------------------------------------------------
                                                                                  

consensus_2901#0      CAGTAAACC-AGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGA 419
consensus_2901#1      -AATCGCCCGAGGGTAACAAGAAGAAGATGTA-TGTTGAACGGGATTAA-GCGTGGCCGA 57
                       * *   ** **   * *************** **************** **********

consensus_2901#0      CACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCA 479
consensus_2901#1      CACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCA 117
                      ************************************************************

consensus_2901#0      GACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATAC 539
consensus_2901#1      GACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATAC 177
                      ************************************************************

consensus_2901#0      GATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCG 599
consensus_2901#1      GATACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCG 237
                      ************************** **** ****************************

consensus_2901#0      GGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAA 659
consensus_2901#1      GGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAA 297
                      ************************************************************

consensus_2901#0      CTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCT 719
consensus_2901#1      CTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCT 357
                      *************************************************** ********

consensus_2901#0      GTCTACNGCGTGAGAATTA----------------------------------------- 738
consensus_2901#1      GTCTACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGT 417
                      ****** ************                                         

consensus_2901#0      -------------------------
consensus_2901#1      AGGATGCGACAAAGTGATGTTAAAA 442