cluster # 2971

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Anopheles gambiae
cluster # 2971 cluster # 2971 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2971#0 length = 1481 sequences # 1

consensus_2971#1 length = 454 sequences # 1

consensusID : consensus_2971#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1481
fasta sequence

                              [GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTGTTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGTGTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGGTTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGNCAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGAGGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGNANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNGCAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGACTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGNGGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGGTAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGCCGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAGNCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGCNCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGCGGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACAGNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCGGNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNAGGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCNGACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATGTCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCCATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGGGCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTCCTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCGTCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG]

[+] EMBL BX466095             [GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTGTTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGTGTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGGTTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGNCAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGAGGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGNANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNGCAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGACTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGNGGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGGTAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGCCGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAGNCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGCNCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGCGGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACAGNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCGGNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNAGGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCNGACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATGTCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCCATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGGGCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTCCTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCGTCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG]




>consensus_2971#0
GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAA
GTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTG
TTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGT
GTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGG
TTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGN
CAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGA
GGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGN
ANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNG
CAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGA
CTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGN
GGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGG
TAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGC
CGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAG
NCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGC
NCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGC
GGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACA
GNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCG
GNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNA
GGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCN
GACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATG
TCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCC
ATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGG
GCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTC
CTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCG
TCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG

consensusID : consensus_2971#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGTTGAAACAAGAAAAAGCGGTAGCTGATTGTGTGTGTGTGTGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACACAGAGACACAAACACACGCACACATTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGATTGTGTTGTTCGTTTTTGTATAGATGTAGATGTACTTCTCGTCGCGCGCACTTGTTTGTGTGTGTGTGTGTGTGTGTGTATATATAAACGGAGGCTTAACGGCAGAGGTTTCATTGATTGATAGACAAGAAGATGCAACAAACAAACAAACAGATATTTTACGCACACTAGGCTCACTCACTACGGTTGATTTTCTT]

[+] EMBL BX616059             [CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGTTGAAACAAGAAAAAGCGGTAGCTGATTGTGTGTGTGTGTGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACACAGAGACACAAACACACGCACACATTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGATTGTGTTGTTCGTTTTTGTATAGATGTAGATGTACTTCTCGTCGCGCGCACTTGTTTGTGTGTGTGTGTGTGTGTGTGTATATATAAACGGAGGCTTAACGGCAGAGGTTTCATTGATTGATAGACAAGAAGATGCAACAAACAAACAAACAGATATTTTACGCACACTAGGCTCACTCACTACGGTTGATTTTCTT]




>consensus_2971#1
CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAAAGAGAGTTGAAACAAGAAAAAGCGGTAGCTGATTGTGTGT
GTGTGTGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACACAGAGACACAAACAC
ACGCACACATTCACACTGACATACAAGTCGTCGAAATCAGGGACTAAAACTAAAGATAGA
CGAATATACGCCTAGGATTGTGTTGTTCGTTTTTGTATAGATGTAGATGTACTTCTCGTC
GCGCGCACTTGTTTGTGTGTGTGTGTGTGTGTGTGTATATATAAACGGAGGCTTAACGGC
AGAGGTTTCATTGATTGATAGACAAGAAGATGCAACAAACAAACAAACAGATATTTTACG
CACACTAGGCTCACTCACTACGGTTGATTTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2971#0      GCNAAGAATCCGACGAGTGAGAGACACAAACACACGCACACACTTCACACTGACATACAA 60
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GTCGTCGAAATCAGGGACTAAAACTAAAGATAGACGAATATACGCCTAGGGATTGTGTTG 120
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      TTCGTTTATNGTAGTAGATGTAGATGGTACTTCTCGTCGGCGCGCACTTGGTTTGTGTGT 180
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GTGTGTGTGNTGTGTGTAGTANTAGTAAACCGGGCAGGGCTGTGACACGGGCGAGCAGGG 240
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      TTNCAGTTTGAGTTGAGGTAGANCACAGGAAAGGAGTGCAACAGNAGCAGAGGCAGAGGN 300
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      CAGGACTNTGGNNGAGCGGCGGCAANGGGAGGGGNATCGACGGNGANAGGTNACGGGGGA 360
consensus_2971#1      ---------CAAAAAGGGACAGCAAATGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 51
                                    ** * * ****  **   *  *  **  * ** **     * * **

consensus_2971#0      GGGAGNTCGGACNTGGGGCGGAGGAANANNGNNGGCCGGGGGGGNCNACGAAAGGGCAGN 420
consensus_2971#1      GAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGTTGA-----AACAAGAAAAAGCGGT 106
                      * ***   *     * *   ***  * *  *   *  *         * ****  ** * 

consensus_2971#0      ANCGACGGGGGGGGNCGAGACAACGGGGGGGCNANCGGAGGCNGCGCACGCGGATTNGNG 480
consensus_2971#1      AGCTGATTGTGTGTGTGTG-TGTCTATGTTAAAAGGAAATGAGATGAAAAAACAACCACA 165
                      * *     * * *   * *    *   *     *    * *    * *     *      

consensus_2971#0      CAGGCGACGTNNCACGCCCGANCCNGATANGGCGGNTAACTAGGTTCAGGNTAGACCCGA 540
consensus_2971#1      CAGA-GACACAA-ACACACGCACACATTCACACTGACATACAAGTC---GTCGAAATCA- 219
                      ***  ***     ** * **  *    *    * *  *   * **    *    *  *  

consensus_2971#0      CTGNNCCCNAAACNGCGGACAGGACAAGGCANGAGNNCAGGGCAGCGACACCAAACAGGN 600
consensus_2971#1      --GGGACTAAAACTAAAGATAGACGAATATACG--CCTAGGATTGTGTTGTTCGTTTTTG 275
                        *   *  ****    ** **   **   * *     ***   * *             

consensus_2971#0      GGCNGACAACGGCGCGCCGCNGGNNNAAANAGGCACCCGTCNGNGCGGCNGGNGATGCGG 660
consensus_2971#1      TATAGATGTAGATGTACTTCTCGTCG---CGCGCACTTGTTTGTGTGTGTGTGTGTGTGT 332
                          **    *  *  *  *  *         ****  **  * * *   *    ** * 

consensus_2971#0      TAGNGNGCNCNNCNCGGGTNAGCGNGGGACGGAGCCGNGCCGACNGCCCGGCNACGCGGC 720
consensus_2971#1      GTGTATATATAA-ACGGAGGCTTAACGGCAGAGGTTTCATTGATTGATAGACAA-GAAGA 390
                        *           ***         **  *  *       **  *   * * * *  * 

consensus_2971#0      CGNGGCCNNACGANCNAGGCGAGACGGGGCNCACAAGACNCNGGNAGAGGGGAGNAAGAG 780
consensus_2971#1      TGCAAC-AAACAAACAAACAGATATTTTACGCACACTAGGCTCACTCACTACGGTTGATT 449
                       *   *   ** * * *   ** *     * ****  *  *      *     *      

consensus_2971#0      NCCNGGGAANGAAGAGGGAACGCGCGAGAGGGGAAAGCNACANNGCCAGGCAANGCGAGC 840
consensus_2971#1      TTCTT------------------------------------------------------- 454
                        *                                                         

consensus_2971#0      NCTATGNCGNCCNGAGGAGGGNGGGGGAAAAGANCGCCANCGCGGGTNNNNNCGCGCGGC 900
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GGAAGCTCNGGACCAGGCCGGGAGGCNNCCGGANACGAGACACAGCNACGGCGGACNACA 960
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GNATGGNANGGAGGTGCAGCAGANGGCGGGNGANACCACGAGAGCGANCAGCGCGGGCCG 1020
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GNCGAAGANCNCAGGGCNAGCGGGGACGNCGCGCGCAAGGCCGGGGAACAGGGGAGGGNA 1080
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GGNACCGNAGGAANGGGGNGCNGACACTTCCGCGAGTGCNNANTCATCTNGCCTGCTCCN 1140
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GACGGGNNNAGGGNCGCTGGAGCTTATNGGNGNTCGNCGGCCTANNTCGACTTTCCGATG 1200
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      TCATGTTCTGATCTGNGCGGGCTNNNCGGNNNCTGNNGAGGTGCAGNCTGCNGGGCNGCC 1260
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      ATAGGTGCCGGGTNGTTTNGGCGGTTGNCCCTAGTGGNGACGTGNAGCNAGTGTGACCGG 1320
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GCTGNAGCAGTCCGAGNATNCCCCTTGCGGTGGGTGGTGGGAGGCGATGNCCAGTNGCTC 1380
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      CTCNNNNNTGAGTGTNCCGGGGTGGGATCGGTGCGATGGAGGGCGGCGCAGGGTTGCGCG 1440
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      TCGATTNACCCANCCGGNATCGCCGGCNGGGCNTTNCNGAG 1481
consensus_2971#1      -----------------------------------------