These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [TTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAACCGGCCAAGTGTTTTCCGCAGAACGTGGAGGACACAATGCTAAAGCGTTATCAGACGACGTTGCGCAAAGTATTCGCCAGTGGTTTGAAGAGGACAGCACACTGAGGCCGAAGCAACTGACCCAGAAGGTGTGGGAACAGTACCATATACGTGTGAGTCCATGCGCCGTTCAACGTGAGTTGAAAGACTTGCAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATAATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTACGGCAGTGGTGATTTCAAAGACAAATTTGAACCTTCTAACAGCGCTCATACCGGTATTAGACGTCCACATGGGACGGAATCAGGAGCATACCTAGGTTCTGTTACAAATGGAGCAATACAAGATTATGCAGAATCTGAGGGCGAATACACAGAGGATCCACTTGGAAGCAGCCCCCCTCCACACCTTTCCATCCACAACCAGGAAAAAACAGATCCCAGCAGACGACTC] [+] EMBL BX625251 [TTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAACCGGCCAAGTGTTTTCCGCAGAACGTGGAGGACACAATGCTAAAGCGTTATCAGACGACGTTGCGCAAAGTATTCGCCAGTGGTTTGAAGAGGACAGCACACTGAGGCCGAAGCAACTGACCCAGAAGGTGTGGGAACAGTACCATATACGTGTGAGTCCATGCGCCGTTCAACGTGAGTTGAAAGACTTGCAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATAATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTACGGCAGTGGTGATTTCAAAGACAAATTTGAACCTTCTAACAGCGCTCATACCGGTATTAGACGTCCACATGGGACGGAATCAGGAGCATACCTAGGTTCTGTTACAAATGGAGCAATACAAGATTATGCAGAATCTGAGGGCGAATACACAGAGGATCCACTTGGAAGCAGCCCCCCTCCACACCTTTCCATCCACAACCAGGAAAAAACAGATCCCAGCAGACGACTC] consensusID : consensus_3003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [TCTAATGTGATCAGTCAGATGTTATTTGCGTGCGTGAAAAAATTGTATTCTTACTAATCAGTGATCAAAAAATCGTCCAATAACTAGAAATATGGAATCGTGCAAAAAACAACCAGCGACCGCTGGTTCTGCTAGCCGCAGTTCGAGAGGCAAAAAGACTGGAACCACGAAAAAGCAAACAAGCGATAAGGATAGAGAACGAATCGTTAATGCATATTTGAAAGGATTCGGTGCAAAAATGATCAGCAACATGCTTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATGATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTTACGGCAGTGNNGATTTCAAAGACCAAATTTGAACCTTTCTAACAGCGCTCATACCGGTATTAGACCGTCCACATTGGNGACGGAATCCA] [+] EMBL BX625066 [TCTAATGTGATCAGTCAGATGTTATTTGCGTGCGTGAAAAAATTGTATTCTTACTAATCAGTGATCAAAAAATCGTCCAATAACTAGAAATATGGAATCGTGCAAAAAACAACCAGCGACCGCTGGTTCTGCTAGCCGCAGTTCGAGAGGCAAAAAGACTGGAACCACGAAAAAGCAAACAAGCGATAAGGATAGAGAACGAATCGTTAATGCATATTTGAAAGGATTCGGTGCAAAAATGATCAGCAACATGCTTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGTACAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCACAAGAATGATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTTGTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGATGCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTTACGGCAGTGNNGATTTCAAAGACCAAATTTGAACCTTTCTAACAGCGCTCATACCGGTATTAGACCGTCCACATTGGNGACGGAATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3003#0 --------------------------------------------------TTAACA-TCA 9 consensus_3003#1 TCTAATGTGATCAGTCAGATGTTATTTGCGTGCGTGAAAAAATTGTATTCTTACTAATCA 60 *** * *** consensus_3003#0 AC-ATCTACACCGTGTACTACATCCTGAAGCA-GTACAGAAGAACCGGCCAAGTGTTTTC 67 consensus_3003#1 GTGATCAAAAAATCGTCCAATAACTAGAAATATGGAATCGTGCAAAAAACAACCAGCGAC 120 *** * * ** * * * * *** * * * * * *** * consensus_3003#0 CGCAGAACGTGGAGGACACAATGCTAAAGCGTTATCAGAC-GACGTTGCGCAAAGTATTC 126 consensus_3003#1 CGCTGGTTCTGCTAGCCGCAGTTCGAGAG-GCAAAAAGACTGGAACCACG-AAAAAGCAA 178 *** * ** * * ** * * * ** * * **** * ** *** consensus_3003#0 GCCAGTGGTTTGAA--GAGGACAGCACACTGAGGCCGAAGC-AACTGACCCAGAAGGTGT 183 consensus_3003#1 ACAAGCGATAAGGATAGAGAACGAATCGTTAATGCATATTTGAAAGGATTCGGTGCAAAA 238 * ** * * * * *** ** * * * ** * ** ** * * consensus_3003#0 GGGAACAGTACCATATACG-TGTGAGTCCATGCGCCGTTCAACGTGAGTTGAAAGACTTG 242 consensus_3003#1 ATGATCAGCAACATGCTTAACATCAACATCTACACCGTGTACTACATCCTGAAGCAGT-A 297 ** *** * *** * * * * **** * **** * * consensus_3003#0 CAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCAC 302 consensus_3003#1 CAGAAGAAGTTATATAAAAGCATGCAGCCCGTTTCCAAACCGAACAGTACCATTCAGCAC 357 ************************************************************ consensus_3003#0 AAGAATAATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTT 362 consensus_3003#1 AAGAATGATTCTAATTGTAATGCGACAAGAAAAGAATCCCTTGCCATAAAAGACTGTCTT 417 ****** ***************************************************** consensus_3003#0 GTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGAT 422 consensus_3003#1 GTAGCGAACGAAAGCACAGTATTTATCAAGCAGGAATACGGCAACAGCAGTGACGATGAT 477 ************************************************************ consensus_3003#0 GCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTT-ACGGCAGTGGTGA 481 consensus_3003#1 GCACAGTTAACAGATCACATTGACATTGGCGAAACTCAGCTAACTTTACGGCAGTGNNGA 537 ********************************************** ********* ** consensus_3003#0 TTTCAAAGAC-AAATTTGAACCTT-CTAACAGCGCTCATACCGGTATTAGAC-GTCCACA 538 consensus_3003#1 TTTCAAAGACCAAATTTGAACCTTTCTAACAGCGCTCATACCGGTATTAGACCGTCCACA 597 ********** ************* *************************** ******* consensus_3003#0 T--GGGACGGAATCAGGAGCATACCTAGGTTCTGTTACAAATGGAGCAATACAAGATTAT 596 consensus_3003#1 TTGGNGACGGAATCCA-------------------------------------------- 613 * * ********* consensus_3003#0 GCAGAATCTGAGGGCGAATACACAGAGGATCCACTTGGAAGCAGCCCCCCTCCACACCTT 656 consensus_3003#1 ------------------------------------------------------------ consensus_3003#0 TCCATCCACAACCAGGAAAAAACAGATCCCAGCAGACGACTC 698 consensus_3003#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||